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The map label for this gene is ybiO [H]

Identifier: 94312836

GI number: 94312836

Start: 455765

End: 458080

Strand: Reverse

Name: ybiO [H]

Synonym: Rmet_3908

Alternate gene names: 94312836

Gene position: 458080-455765 (Counterclockwise)

Preceding gene: 291481497

Following gene: 94312835

Centisome position: 17.75

GC content: 64.64

Gene sequence:

>2316_bases
ATGCAGCGTTCACGACTACGCGTTCCAGTTTTCACCTGGCTTGTCGGCATCCTGATGGCGATGTTCCTGGCCGGCGCCGC
GCAGAGCGCCGGACTGTCGCTCGCCGCGATGACCCAGAAGGCCAACGCCCAACCCGCTTCGGCACCCCCCGCCAGCGCGC
CTCTGGCGCAATCGCTCGATCAGGTCATCAATACCTTGCAGAACGAGGGCGAACGACAGGCTTTGGTGAAGCAACTGCAG
GCGGTGCGTACTGGCCTCGACGCATCGGCGGCGGGCGCGGCAGGGGCGGCATCGGCCGCTGGCGCCAGCGCACCCTCCCC
GGGCCTGATTGGCGCCGTTGCGCAGGCCATCCAGGAAATGGACAACGCGCCGCACAAAAATAGCGGCGCAATGCATTACT
GGAAGTGGCGGATGGAGTTCGCCCGCGAAGAACTGCACGATGCCCTGACGATCAAGAACACCCGCAAAGCCATCGTCTCC
TGGACCGAATTCGGCACCGTGTTTGCCGGGTGGGCCATTACCGGCTGGCTGTTGCGGGAACTGGCTCGGCGATTGCGCCA
GAATCGGTTGCGGCGGCCCAGAGACCACCAACTCCCGAAAATACCTTCGTGGATCGATGTCAGCCTGTACTTCGTGCGTG
GCATTGGACCGTGGATCGTCGCATTCGGCCTGACGGTACTGCTCGCCTATCAAGTGTTCGGTCGCACGCCGGCCAGTGTG
GGCGCCGTTCTGGTGGCCTACGCGATCCTGGCCGGCGCCGTGATGTCGGCGGTCTGCCAGGTCATCTTCACGCTGTTCCA
GTCCGCGCATCGCGCACACGCCGTGCGTGACCTGATTACCCATTCCCCGATCCTGCTGTTCATCACCGGCTCACTGGCCG
CGCTGGGAGAGGTCAACAGCGATCCGCGCGTGATCGCCGCGCTTGGCCTCAACCTGACGGCGTTGATCAGCACGCTGTCC
AATATCCTCGCGGCGATCCTGATTGGCGTGTTTGCCGTGCGATTCCGCCGCGCCATCGGCCAGTTGATCTCGTTCCGACC
GTTTGCGATTCGGCAGGAATACCCCGCGATGATGGATCTGCTGCGCCTGGCGGGTGATGCGTGGTATCTGCCCGTGCTCG
CCGTAGTCGCGGCATCGGTCATCGGCACGATCATGGCCACCGGCCATGCCGACGAGTTCCTGCGGCGCGCGGTCATCACG
GTGGCATTGTTCGTGACCGCCACGCTGTTGACGCTCGTGGTGGGCCGATCGCCCAAGGCAACGGTGCGCGCCCCGCGCCT
GCGCGATCGGCGGCGCTCCGCGTACGTGCAGCGCTTTGGCCGCTTTGGCGCGGCGCTGATCCGCGTGGTGATCTGGATCA
CATTCCTGGAACTCAACGCGCGTATCTGGCAGACCTCGCTGATACGAATTGCCCAATCGACCGCCGCCGGCCGTCACATC
ACCGAGTCGCTGCTCGGCGTGGTCGGCGTGGTGCTGCTGGCATGGCTGGCCTGGCTGCTGATCGACACGGCCATCACCCA
GACGCTTTCCCCCACGCACGGCCGCGCCGCGCAGCCCAGCCTGCGTGCCAAGACCATCCTGCCCCTCGTGCGCAATGCGT
CATTCGTGAGCGTGCTCGTGGTAGCAATGATCGCGGTGCTGGCCAACCTTGGCGTCAACGTCACGCCGCTGCTCGCCGGC
GCAGGTGTGGTCGGGCTGGCCATCGGCTTCGGTGCGCAAACGCTGGTGCAGGATTTGATCACCGGTTTGTTCATCGTCGT
CGAAGATACGATCGCCATCGGCGATTCGATCGAGTTGCCGGACCATGTTGGCGTAGTCGAGGCCATGACGATCCGGACCG
TGCGACTGCGCGACGGCAAGGGCGCCGTGCACACGCTGCCATACAGCCAGATCAAGGCGGTCAAGAACCTGTCGCGCGGC
TATGCCTTCGCCGTCTTCAACATCTCGATTGCCTATCAGAGCGACTTCGAGCGAGCATTGGAGCTGGTGCGCGAAACCGG
CGCCGAGGTGGCGCGCGATCATCGCTACAGCCGCAACCTGCTGTCCGGTCTGGACATCCTGGGGCTCGACCGTTTCGATC
CCACCGGTCAGGTCGTGCTGGCCCAGTTCAAGACACGGCCACTCACGCAGTACGAAATCACGCGGGCCTTCAACATCCGG
CTCAAGCGCAACTTCGACGCCAATGGCATTCGACTGGCCGTACCGTTCGTGACGGTGCAGGTGGATGGCAGCGGCACTGA
AGAAGAGATCGCGACAGCCGCCGCGGCTGGAGCAGGCGCCGATCTCGTCACCCGAAAAGCTGGCAAGCCGGCCTGA

Upstream 100 bases:

>100_bases
ACACCCCACTCGCACACGTGCATCGCGTGCCGATGCGCTACAGTGACGCGCATACAGGTGCTCCTATCGCGGCAATCCCC
CTGCCACATCCCAACCGTCC

Downstream 100 bases:

>100_bases
CGACGCTGCCATTGTGAGCATAGGGGCGCGCCCGCATAGGGGTGTCTCATTTATGCAATGGCGCTCCAATACATTGGACC
GGAAAATTTTGAAATACAGT

Product: putative small-conductance mechanosensitive channel transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 771; Mature: 771

Protein sequence:

>771_residues
MQRSRLRVPVFTWLVGILMAMFLAGAAQSAGLSLAAMTQKANAQPASAPPASAPLAQSLDQVINTLQNEGERQALVKQLQ
AVRTGLDASAAGAAGAASAAGASAPSPGLIGAVAQAIQEMDNAPHKNSGAMHYWKWRMEFAREELHDALTIKNTRKAIVS
WTEFGTVFAGWAITGWLLRELARRLRQNRLRRPRDHQLPKIPSWIDVSLYFVRGIGPWIVAFGLTVLLAYQVFGRTPASV
GAVLVAYAILAGAVMSAVCQVIFTLFQSAHRAHAVRDLITHSPILLFITGSLAALGEVNSDPRVIAALGLNLTALISTLS
NILAAILIGVFAVRFRRAIGQLISFRPFAIRQEYPAMMDLLRLAGDAWYLPVLAVVAASVIGTIMATGHADEFLRRAVIT
VALFVTATLLTLVVGRSPKATVRAPRLRDRRRSAYVQRFGRFGAALIRVVIWITFLELNARIWQTSLIRIAQSTAAGRHI
TESLLGVVGVVLLAWLAWLLIDTAITQTLSPTHGRAAQPSLRAKTILPLVRNASFVSVLVVAMIAVLANLGVNVTPLLAG
AGVVGLAIGFGAQTLVQDLITGLFIVVEDTIAIGDSIELPDHVGVVEAMTIRTVRLRDGKGAVHTLPYSQIKAVKNLSRG
YAFAVFNISIAYQSDFERALELVRETGAEVARDHRYSRNLLSGLDILGLDRFDPTGQVVLAQFKTRPLTQYEITRAFNIR
LKRNFDANGIRLAVPFVTVQVDGSGTEEEIATAAAAGAGADLVTRKAGKPA

Sequences:

>Translated_771_residues
MQRSRLRVPVFTWLVGILMAMFLAGAAQSAGLSLAAMTQKANAQPASAPPASAPLAQSLDQVINTLQNEGERQALVKQLQ
AVRTGLDASAAGAAGAASAAGASAPSPGLIGAVAQAIQEMDNAPHKNSGAMHYWKWRMEFAREELHDALTIKNTRKAIVS
WTEFGTVFAGWAITGWLLRELARRLRQNRLRRPRDHQLPKIPSWIDVSLYFVRGIGPWIVAFGLTVLLAYQVFGRTPASV
GAVLVAYAILAGAVMSAVCQVIFTLFQSAHRAHAVRDLITHSPILLFITGSLAALGEVNSDPRVIAALGLNLTALISTLS
NILAAILIGVFAVRFRRAIGQLISFRPFAIRQEYPAMMDLLRLAGDAWYLPVLAVVAASVIGTIMATGHADEFLRRAVIT
VALFVTATLLTLVVGRSPKATVRAPRLRDRRRSAYVQRFGRFGAALIRVVIWITFLELNARIWQTSLIRIAQSTAAGRHI
TESLLGVVGVVLLAWLAWLLIDTAITQTLSPTHGRAAQPSLRAKTILPLVRNASFVSVLVVAMIAVLANLGVNVTPLLAG
AGVVGLAIGFGAQTLVQDLITGLFIVVEDTIAIGDSIELPDHVGVVEAMTIRTVRLRDGKGAVHTLPYSQIKAVKNLSRG
YAFAVFNISIAYQSDFERALELVRETGAEVARDHRYSRNLLSGLDILGLDRFDPTGQVVLAQFKTRPLTQYEITRAFNIR
LKRNFDANGIRLAVPFVTVQVDGSGTEEEIATAAAAGAGADLVTRKAGKPA
>Mature_771_residues
MQRSRLRVPVFTWLVGILMAMFLAGAAQSAGLSLAAMTQKANAQPASAPPASAPLAQSLDQVINTLQNEGERQALVKQLQ
AVRTGLDASAAGAAGAASAAGASAPSPGLIGAVAQAIQEMDNAPHKNSGAMHYWKWRMEFAREELHDALTIKNTRKAIVS
WTEFGTVFAGWAITGWLLRELARRLRQNRLRRPRDHQLPKIPSWIDVSLYFVRGIGPWIVAFGLTVLLAYQVFGRTPASV
GAVLVAYAILAGAVMSAVCQVIFTLFQSAHRAHAVRDLITHSPILLFITGSLAALGEVNSDPRVIAALGLNLTALISTLS
NILAAILIGVFAVRFRRAIGQLISFRPFAIRQEYPAMMDLLRLAGDAWYLPVLAVVAASVIGTIMATGHADEFLRRAVIT
VALFVTATLLTLVVGRSPKATVRAPRLRDRRRSAYVQRFGRFGAALIRVVIWITFLELNARIWQTSLIRIAQSTAAGRHI
TESLLGVVGVVLLAWLAWLLIDTAITQTLSPTHGRAAQPSLRAKTILPLVRNASFVSVLVVAMIAVLANLGVNVTPLLAG
AGVVGLAIGFGAQTLVQDLITGLFIVVEDTIAIGDSIELPDHVGVVEAMTIRTVRLRDGKGAVHTLPYSQIKAVKNLSRG
YAFAVFNISIAYQSDFERALELVRETGAEVARDHRYSRNLLSGLDILGLDRFDPTGQVVLAQFKTRPLTQYEITRAFNIR
LKRNFDANGIRLAVPFVTVQVDGSGTEEEIATAAAAGAGADLVTRKAGKPA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=269, Percent_Identity=33.8289962825279, Blast_Score=133, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 82955; Mature: 82955

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSRLRVPVFTWLVGILMAMFLAGAAQSAGLSLAAMTQKANAQPASAPPASAPLAQSLD
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH
QVINTLQNEGERQALVKQLQAVRTGLDASAAGAAGAASAAGASAPSPGLIGAVAQAIQEM
HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
DNAPHKNSGAMHYWKWRMEFAREELHDALTIKNTRKAIVSWTEFGTVFAGWAITGWLLRE
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARRLRQNRLRRPRDHQLPKIPSWIDVSLYFVRGIGPWIVAFGLTVLLAYQVFGRTPASV
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHH
GAVLVAYAILAGAVMSAVCQVIFTLFQSAHRAHAVRDLITHSPILLFITGSLAALGEVNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCC
DPRVIAALGLNLTALISTLSNILAAILIGVFAVRFRRAIGQLISFRPFAIRQEYPAMMDL
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHH
LRLAGDAWYLPVLAVVAASVIGTIMATGHADEFLRRAVITVALFVTATLLTLVVGRSPKA
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVRAPRLRDRRRSAYVQRFGRFGAALIRVVIWITFLELNARIWQTSLIRIAQSTAAGRHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
TESLLGVVGVVLLAWLAWLLIDTAITQTLSPTHGRAAQPSLRAKTILPLVRNASFVSVLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
VAMIAVLANLGVNVTPLLAGAGVVGLAIGFGAQTLVQDLITGLFIVVEDTIAIGDSIELP
HHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHEEHHHHCCCCCCCC
DHVGVVEAMTIRTVRLRDGKGAVHTLPYSQIKAVKNLSRGYAFAVFNISIAYQSDFERAL
CCCCHHHHHHEEEEEEECCCCCEEECCHHHHHHHHHHHCCEEEEEEEEEEEEHHHHHHHH
ELVRETGAEVARDHRYSRNLLSGLDILGLDRFDPTGQVVLAQFKTRPLTQYEITRAFNIR
HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCCCHHHHHHHEEEE
LKRNFDANGIRLAVPFVTVQVDGSGTEEEIATAAAAGAGADLVTRKAGKPA
EEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MQRSRLRVPVFTWLVGILMAMFLAGAAQSAGLSLAAMTQKANAQPASAPPASAPLAQSLD
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH
QVINTLQNEGERQALVKQLQAVRTGLDASAAGAAGAASAAGASAPSPGLIGAVAQAIQEM
HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
DNAPHKNSGAMHYWKWRMEFAREELHDALTIKNTRKAIVSWTEFGTVFAGWAITGWLLRE
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARRLRQNRLRRPRDHQLPKIPSWIDVSLYFVRGIGPWIVAFGLTVLLAYQVFGRTPASV
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHH
GAVLVAYAILAGAVMSAVCQVIFTLFQSAHRAHAVRDLITHSPILLFITGSLAALGEVNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCC
DPRVIAALGLNLTALISTLSNILAAILIGVFAVRFRRAIGQLISFRPFAIRQEYPAMMDL
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHH
LRLAGDAWYLPVLAVVAASVIGTIMATGHADEFLRRAVITVALFVTATLLTLVVGRSPKA
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVRAPRLRDRRRSAYVQRFGRFGAALIRVVIWITFLELNARIWQTSLIRIAQSTAAGRHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
TESLLGVVGVVLLAWLAWLLIDTAITQTLSPTHGRAAQPSLRAKTILPLVRNASFVSVLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
VAMIAVLANLGVNVTPLLAGAGVVGLAIGFGAQTLVQDLITGLFIVVEDTIAIGDSIELP
HHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHEEHHHHCCCCCCCC
DHVGVVEAMTIRTVRLRDGKGAVHTLPYSQIKAVKNLSRGYAFAVFNISIAYQSDFERAL
CCCCHHHHHHEEEEEEECCCCCEEECCHHHHHHHHHHHCCEEEEEEEEEEEEHHHHHHHH
ELVRETGAEVARDHRYSRNLLSGLDILGLDRFDPTGQVVLAQFKTRPLTQYEITRAFNIR
HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCCCHHHHHHHEEEE
LKRNFDANGIRLAVPFVTVQVDGSGTEEEIATAAAAGAGADLVTRKAGKPA
EEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]