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The map label for this gene is soxC [H]

Identifier: 94312786

GI number: 94312786

Start: 400022

End: 401377

Strand: Reverse

Name: soxC [H]

Synonym: Rmet_3858

Alternate gene names: 94312786

Gene position: 401377-400022 (Counterclockwise)

Preceding gene: 94312787

Following gene: 94312781

Centisome position: 15.56

GC content: 65.63

Gene sequence:

>1356_bases
ATGCGGAATTCGCGCTTAGTGACGCGGGCGGGATTGGTTACTCTGAACGGCCCAGAGCAACCCTCGCCGATAGGCGCAGA
AGCCCGTACCGTGACTACAGAAGCTGCACTTCAAATCGTCGCCCCTGCAGGTGCGACAAAATCGAACCACCCGCATCCCG
CGCCGCCCGGCAACGCACTACCGCCGGCAGCGGATGTCGCCATCCTGCGTCAGCGCGCGCAAGCGCTACTGCCCCGGATT
GCCGAAGGCGCGGCAATCCGCGAGCTCCAGCGCGATCTGCCCTACGCTTTCGCGCGAGAGGTCGCCAACGCCGGCCTGCT
GACGTTCCGCATTCCCAAGGTCTACGGCGGGCCGGGTGGCACGTTGCGCGATGCCATCCGCTTCGTGATCGAACTCGCGG
CCGTGGACTCCAATCTCGCACAGGCGCTGCGTCCCAACTTCGGCCTGGTGGAAGGTCTGCTGGCCGCGCACGACAACGAA
GCCGATCGCAAGCGCTGGTTCGGCCGTCTGCTGGCCGGGCATATCATCGGCAACGGCGGCGTGGAGCGCGGCGGCAAGCA
GGGCGCCATTCAGGCCACCATCGTGCGCCATGGCGACCACTACCTCGTCAATGGCACCAAGTACTACAGCACCGGTGGGC
TCTATGCGGACTGGGTCAGCTCGATCGCGCTGGACGAAGCCGGCAAGGAAACGCACTTCACCGTGCCGCGCGAACGCGCG
GGCATGGAACTGGTGGACGACTTCGATACGATCGGTCAGCGGCTGACGGCCAGCGGTACCACGCGCTTCACGAACATGCG
CGTGGAGACGGACGAGGTACGCGGCAGCTTTCTGCCGCGTGATCGCCGCAACCCGGTTTCGCCGGTATTCCAGCTATTCC
TTGCCGCCACCGAGGCGGGCATCGCACGCAATGCGCTCAATGATGCGGTCTGGTTCGCGCGCAACAAGGCCCGTCCGATC
AAGCACAGTTCGGCCGAGCGCTCGGTGGATGACCCCTACGTGCAAGAGACCATTGGCCAGATCTCTGCCGAGGTCTTTGC
CGCCGAAGCCGCTACGCTACGTGCGGCCGATACCATCGACGCCGCCTGGGCCGACAACCTGAGCAACGCATCGCTGACGC
AGGCATCGATCGACGTTGCCCAGGCGCAGGTCTTCACCGTTGCAGCCGCGCTCAAGGCTTCGGAGTTGGCCCTTGATGTT
GGCGGGGCTTCCTCGTGCGACCGCCAGTACAACCTGGACCGTCACTGGCGCAACGCCAGGACCGTGGCGAATCACAATCC
CCGCCAATGGAAGGCAGCGGCGGTGGGCGCCTGGCTGCTCAAGGATGAGCCGCCGCCCACGACCGGCCTGTTCTGA

Upstream 100 bases:

>100_bases
GCATAGAAGCGTTGGCTAGGTCGATCGTGCAAACAGTGGCGGAGCAGCAACCCGCCTGAGTCCAGTCGCTACGCGTCTCA
TACGGACGGGTAGCGTCGAC

Downstream 100 bases:

>100_bases
TCTTTTCCGATCGCGAAGGGAAGCCCCCACGTTTTCACGTGGGGGCTTCGCGTTACCTGCTACCTGCGATGGTCGAACTG
ACGTGCCAGCCGCTCTCCGC

Product: putative Acyl-CoA dehydrogenase

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MRNSRLVTRAGLVTLNGPEQPSPIGAEARTVTTEAALQIVAPAGATKSNHPHPAPPGNALPPAADVAILRQRAQALLPRI
AEGAAIRELQRDLPYAFAREVANAGLLTFRIPKVYGGPGGTLRDAIRFVIELAAVDSNLAQALRPNFGLVEGLLAAHDNE
ADRKRWFGRLLAGHIIGNGGVERGGKQGAIQATIVRHGDHYLVNGTKYYSTGGLYADWVSSIALDEAGKETHFTVPRERA
GMELVDDFDTIGQRLTASGTTRFTNMRVETDEVRGSFLPRDRRNPVSPVFQLFLAATEAGIARNALNDAVWFARNKARPI
KHSSAERSVDDPYVQETIGQISAEVFAAEAATLRAADTIDAAWADNLSNASLTQASIDVAQAQVFTVAAALKASELALDV
GGASSCDRQYNLDRHWRNARTVANHNPRQWKAAAVGAWLLKDEPPPTTGLF

Sequences:

>Translated_451_residues
MRNSRLVTRAGLVTLNGPEQPSPIGAEARTVTTEAALQIVAPAGATKSNHPHPAPPGNALPPAADVAILRQRAQALLPRI
AEGAAIRELQRDLPYAFAREVANAGLLTFRIPKVYGGPGGTLRDAIRFVIELAAVDSNLAQALRPNFGLVEGLLAAHDNE
ADRKRWFGRLLAGHIIGNGGVERGGKQGAIQATIVRHGDHYLVNGTKYYSTGGLYADWVSSIALDEAGKETHFTVPRERA
GMELVDDFDTIGQRLTASGTTRFTNMRVETDEVRGSFLPRDRRNPVSPVFQLFLAATEAGIARNALNDAVWFARNKARPI
KHSSAERSVDDPYVQETIGQISAEVFAAEAATLRAADTIDAAWADNLSNASLTQASIDVAQAQVFTVAAALKASELALDV
GGASSCDRQYNLDRHWRNARTVANHNPRQWKAAAVGAWLLKDEPPPTTGLF
>Mature_451_residues
MRNSRLVTRAGLVTLNGPEQPSPIGAEARTVTTEAALQIVAPAGATKSNHPHPAPPGNALPPAADVAILRQRAQALLPRI
AEGAAIRELQRDLPYAFAREVANAGLLTFRIPKVYGGPGGTLRDAIRFVIELAAVDSNLAQALRPNFGLVEGLLAAHDNE
ADRKRWFGRLLAGHIIGNGGVERGGKQGAIQATIVRHGDHYLVNGTKYYSTGGLYADWVSSIALDEAGKETHFTVPRERA
GMELVDDFDTIGQRLTASGTTRFTNMRVETDEVRGSFLPRDRRNPVSPVFQLFLAATEAGIARNALNDAVWFARNKARPI
KHSSAERSVDDPYVQETIGQISAEVFAAEAATLRAADTIDAAWADNLSNASLTQASIDVAQAQVFTVAAALKASELALDV
GGASSCDRQYNLDRHWRNARTVANHNPRQWKAAAVGAWLLKDEPPPTTGLF

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17534899, Length=344, Percent_Identity=24.1279069767442, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=329, Percent_Identity=20.6686930091185, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=342, Percent_Identity=23.9766081871345, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17506239, Length=295, Percent_Identity=21.6949152542373, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 48476; Mature: 48476

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSRLVTRAGLVTLNGPEQPSPIGAEARTVTTEAALQIVAPAGATKSNHPHPAPPGNAL
CCCCCEEEEECEEEECCCCCCCCCCCCHHEEEHHHHEEEEECCCCCCCCCCCCCCCCCCC
PPAADVAILRQRAQALLPRIAEGAAIRELQRDLPYAFAREVANAGLLTFRIPKVYGGPGG
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCEEEEECCCEECCCCH
TLRDAIRFVIELAAVDSNLAQALRPNFGLVEGLLAAHDNEADRKRWFGRLLAGHIIGNGG
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
VERGGKQGAIQATIVRHGDHYLVNGTKYYSTGGLYADWVSSIALDEAGKETHFTVPRERA
CCCCCCCCCEEEEEEECCCEEEECCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHC
GMELVDDFDTIGQRLTASGTTRFTNMRVETDEVRGSFLPRDRRNPVSPVFQLFLAATEAG
CCHHHHHHHHHHHHEECCCCEEEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
IARNALNDAVWFARNKARPIKHSSAERSVDDPYVQETIGQISAEVFAAEAATLRAADTID
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAWADNLSNASLTQASIDVAQAQVFTVAAALKASELALDVGGASSCDRQYNLDRHWRNAR
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHH
TVANHNPRQWKAAAVGAWLLKDEPPPTTGLF
HHCCCCCCHHHHHHHEEEEECCCCCCCCCCC
>Mature Secondary Structure
MRNSRLVTRAGLVTLNGPEQPSPIGAEARTVTTEAALQIVAPAGATKSNHPHPAPPGNAL
CCCCCEEEEECEEEECCCCCCCCCCCCHHEEEHHHHEEEEECCCCCCCCCCCCCCCCCCC
PPAADVAILRQRAQALLPRIAEGAAIRELQRDLPYAFAREVANAGLLTFRIPKVYGGPGG
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCEEEEECCCEECCCCH
TLRDAIRFVIELAAVDSNLAQALRPNFGLVEGLLAAHDNEADRKRWFGRLLAGHIIGNGG
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
VERGGKQGAIQATIVRHGDHYLVNGTKYYSTGGLYADWVSSIALDEAGKETHFTVPRERA
CCCCCCCCCEEEEEEECCCEEEECCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHC
GMELVDDFDTIGQRLTASGTTRFTNMRVETDEVRGSFLPRDRRNPVSPVFQLFLAATEAG
CCHHHHHHHHHHHHEECCCCEEEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
IARNALNDAVWFARNKARPIKHSSAERSVDDPYVQETIGQISAEVFAAEAATLRAADTID
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAWADNLSNASLTQASIDVAQAQVFTVAAALKASELALDVGGASSCDRQYNLDRHWRNAR
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHH
TVANHNPRQWKAAAVGAWLLKDEPPPTTGLF
HHCCCCCCHHHHHHHEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]