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The map label for this gene is yfcH [C]

Identifier: 94312777

GI number: 94312777

Start: 391231

End: 392700

Strand: Reverse

Name: yfcH [C]

Synonym: Rmet_3849

Alternate gene names: 94312777

Gene position: 392700-391231 (Counterclockwise)

Preceding gene: 94312778

Following gene: 94312775

Centisome position: 15.22

GC content: 65.17

Gene sequence:

>1470_bases
ATGAACAACACCTTGCCGGTCCTGGACTGGACCATCAATCTCCTGATCGTGCAGGCGCTGATGGGCGCCTTCGACACGCT
CTACCACCACGAGCTGACACAAGGCCTGTCACACAGCCCCCGCGCACGGCGAGAGCTGTCCATCCACGCCATCCGCGCCG
TGCTGTACGGCGTGCTGTTTGCGTCGATGGCCAATCTCAAGTTCTTTGGCATCTGGACATTCGCCATCGCCGGCCTCGTG
GTGGTGGAAGTATGGCTGACGCTCTGGGATTTCGTCGTGGAGGATCGAAGCCGCAAACTCCCGGCCACCGAGCGTGTGCT
CCACACGCTGCTGGCCATCAATGGCGGCGCGCTGTTTGGCTTGTACGCGGTTCAGCTTGTCGAGTGGTTCCAGGCACCCA
CGGGACTGGCAATCGCCAGCTTCGGCTGGCGCGGCTGGCTGTTAAGCCTCGCCGCCGCAGGGGTGACGGTGTCTGGCATT
CGCGATGGACTCGCCGCGAGACGCATGAGCCGTCGCGGCGCGGCCGTCAATCCATTCGCCGGGCAATCACACCTGAGCGT
TCTGGTGACGGGCGGCACCGGATTCATCGGCGAGGCGCTCGTCACCCAACTGCTCGATGCCGGCCATACCGTCACGCTAC
TGGCACGCGACCCGCTACGCGCGGCATATCAGTTCACCGGCCGCGCCCGCAGCGTGACGTCCCTCGATCAATTGCACGCA
CAGGAACGGTTTGACGCGGTAATCAATCTGGCCGGCGCACCAGTACTGGGGCCGCGCTGGAGCCAGCGGCGGCGGGCGCA
GTTGCTGGCCAGCCGCGTCGGTGTCACGCAAGCGCTGACACGCTGGGCCAGTCATGCCACGCACAAGCCTGCCATCTGGA
TTCAGGCATCCGCCATCGGCTTCTACGGCGCACGCGACGGCGATCAGCTGCTGGACGAGCACAGCGCGCCCGGAGGCGGC
TTTATGTCCGAGCTATGTCGGAGATGGGAGGAATCCGCCGAGCCACTGCGTGACTACGGCCTCCGCATGGTCGTGCTACG
GCTTGGCGTGGTCTTCGGACCCGGTGGCGCCCTCCCACCCATGATGCTGCCTCACTACTTCGGCCTGGGTGGGCGACTGG
GAAACGGAAGGCAGGTGATGAGCTGGATTCATCGCGAGGATCTGCTGCGTATCCTCGCGCGGGCATTGTCGGACCCGGGC
ATGAGCGGCGTCTACAACGCGACGGCACCGGGCTGCCTGACGCAAGCAGAGTTCGCTCGTACCGTCGGCAAGGTGCTTCG
CCGACCTGTGTGGTTCCACCTGCCCGCGGCGCCACTTCGGTGGGCAGCGGGCGAGATGAGCGAATTGCTACTTGCGGGTC
AGCGGGTGATCCCGGCACGGCTGCAACGGGAGGGCTTTGCGTTTCGCTTTCCTGCAGCCGAATCGGCACTACGCGATCTG
ACCGGGGATAGAGCTTCGCTCCGGCATTAG

Upstream 100 bases:

>100_bases
TCTCGCTGCAAGCGCACGTATGGCCGCATGTATTGGTCGACGCGGTGGCGCTGCTCACGATGATTCCACCATTGCTCTAT
CTGTGGCGAAAGGACGCAGC

Downstream 100 bases:

>100_bases
CTCCGGAATTAGCTTCGGCCCGCCCGTGCCGCCTCGATCGCGGCGATGTCGATCTTGCCCATGGTCATCATGGCATCGAA
CGCCCGTTTGGCCGCCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MNNTLPVLDWTINLLIVQALMGAFDTLYHHELTQGLSHSPRARRELSIHAIRAVLYGVLFASMANLKFFGIWTFAIAGLV
VVEVWLTLWDFVVEDRSRKLPATERVLHTLLAINGGALFGLYAVQLVEWFQAPTGLAIASFGWRGWLLSLAAAGVTVSGI
RDGLAARRMSRRGAAVNPFAGQSHLSVLVTGGTGFIGEALVTQLLDAGHTVTLLARDPLRAAYQFTGRARSVTSLDQLHA
QERFDAVINLAGAPVLGPRWSQRRRAQLLASRVGVTQALTRWASHATHKPAIWIQASAIGFYGARDGDQLLDEHSAPGGG
FMSELCRRWEESAEPLRDYGLRMVVLRLGVVFGPGGALPPMMLPHYFGLGGRLGNGRQVMSWIHREDLLRILARALSDPG
MSGVYNATAPGCLTQAEFARTVGKVLRRPVWFHLPAAPLRWAAGEMSELLLAGQRVIPARLQREGFAFRFPAAESALRDL
TGDRASLRH

Sequences:

>Translated_489_residues
MNNTLPVLDWTINLLIVQALMGAFDTLYHHELTQGLSHSPRARRELSIHAIRAVLYGVLFASMANLKFFGIWTFAIAGLV
VVEVWLTLWDFVVEDRSRKLPATERVLHTLLAINGGALFGLYAVQLVEWFQAPTGLAIASFGWRGWLLSLAAAGVTVSGI
RDGLAARRMSRRGAAVNPFAGQSHLSVLVTGGTGFIGEALVTQLLDAGHTVTLLARDPLRAAYQFTGRARSVTSLDQLHA
QERFDAVINLAGAPVLGPRWSQRRRAQLLASRVGVTQALTRWASHATHKPAIWIQASAIGFYGARDGDQLLDEHSAPGGG
FMSELCRRWEESAEPLRDYGLRMVVLRLGVVFGPGGALPPMMLPHYFGLGGRLGNGRQVMSWIHREDLLRILARALSDPG
MSGVYNATAPGCLTQAEFARTVGKVLRRPVWFHLPAAPLRWAAGEMSELLLAGQRVIPARLQREGFAFRFPAAESALRDL
TGDRASLRH
>Mature_489_residues
MNNTLPVLDWTINLLIVQALMGAFDTLYHHELTQGLSHSPRARRELSIHAIRAVLYGVLFASMANLKFFGIWTFAIAGLV
VVEVWLTLWDFVVEDRSRKLPATERVLHTLLAINGGALFGLYAVQLVEWFQAPTGLAIASFGWRGWLLSLAAAGVTVSGI
RDGLAARRMSRRGAAVNPFAGQSHLSVLVTGGTGFIGEALVTQLLDAGHTVTLLARDPLRAAYQFTGRARSVTSLDQLHA
QERFDAVINLAGAPVLGPRWSQRRRAQLLASRVGVTQALTRWASHATHKPAIWIQASAIGFYGARDGDQLLDEHSAPGGG
FMSELCRRWEESAEPLRDYGLRMVVLRLGVVFGPGGALPPMMLPHYFGLGGRLGNGRQVMSWIHREDLLRILARALSDPG
MSGVYNATAPGCLTQAEFARTVGKVLRRPVWFHLPAAPLRWAAGEMSELLLAGQRVIPARLQREGFAFRFPAAESALRDL
TGDRASLRH

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=305, Percent_Identity=40, Blast_Score=169, Evalue=5e-42,
Organism=Escherichia coli, GI1788642, Length=298, Percent_Identity=37.248322147651, Blast_Score=196, Evalue=2e-51,
Organism=Drosophila melanogaster, GI28573846, Length=300, Percent_Identity=31.6666666666667, Blast_Score=152, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 53505; Mature: 53505

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTLPVLDWTINLLIVQALMGAFDTLYHHELTQGLSHSPRARRELSIHAIRAVLYGVLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
ASMANLKFFGIWTFAIAGLVVVEVWLTLWDFVVEDRSRKLPATERVLHTLLAINGGALFG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHH
LYAVQLVEWFQAPTGLAIASFGWRGWLLSLAAAGVTVSGIRDGLAARRMSRRGAAVNPFA
HHHHHHHHHHCCCCCCEEHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
GQSHLSVLVTGGTGFIGEALVTQLLDAGHTVTLLARDPLRAAYQFTGRARSVTSLDQLHA
CCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH
QERFDAVINLAGAPVLGPRWSQRRRAQLLASRVGVTQALTRWASHATHKPAIWIQASAIG
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
FYGARDGDQLLDEHSAPGGGFMSELCRRWEESAEPLRDYGLRMVVLRLGVVFGPGGALPP
ECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCH
MMLPHYFGLGGRLGNGRQVMSWIHREDLLRILARALSDPGMSGVYNATAPGCLTQAEFAR
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
TVGKVLRRPVWFHLPAAPLRWAAGEMSELLLAGQRVIPARLQREGFAFRFPAAESALRDL
HHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCHHHHHHHH
TGDRASLRH
CCCHHHCCC
>Mature Secondary Structure
MNNTLPVLDWTINLLIVQALMGAFDTLYHHELTQGLSHSPRARRELSIHAIRAVLYGVLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
ASMANLKFFGIWTFAIAGLVVVEVWLTLWDFVVEDRSRKLPATERVLHTLLAINGGALFG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHH
LYAVQLVEWFQAPTGLAIASFGWRGWLLSLAAAGVTVSGIRDGLAARRMSRRGAAVNPFA
HHHHHHHHHHCCCCCCEEHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
GQSHLSVLVTGGTGFIGEALVTQLLDAGHTVTLLARDPLRAAYQFTGRARSVTSLDQLHA
CCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH
QERFDAVINLAGAPVLGPRWSQRRRAQLLASRVGVTQALTRWASHATHKPAIWIQASAIG
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
FYGARDGDQLLDEHSAPGGGFMSELCRRWEESAEPLRDYGLRMVVLRLGVVFGPGGALPP
ECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCH
MMLPHYFGLGGRLGNGRQVMSWIHREDLLRILARALSDPGMSGVYNATAPGCLTQAEFAR
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
TVGKVLRRPVWFHLPAAPLRWAAGEMSELLLAGQRVIPARLQREGFAFRFPAAESALRDL
HHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCHHHHHHHH
TGDRASLRH
CCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]