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The map label for this gene is ycbB [H]

Identifier: 94312745

GI number: 94312745

Start: 355801

End: 357423

Strand: Reverse

Name: ycbB [H]

Synonym: Rmet_3815

Alternate gene names: 94312745

Gene position: 357423-355801 (Counterclockwise)

Preceding gene: 94312746

Following gene: 94312744

Centisome position: 13.85

GC content: 65.19

Gene sequence:

>1623_bases
ATGCCGATGACCGCCACCGCTGTTATCTCGACCCGTCCCTCGACACCCCACCCACGCCGGAAACGGACATGGATGCGAGC
CGCGTTATGCGCCTGGTTCATCGGCGCCGCGACGTCCGCCTGGGCGCAGCCACTGTGGTTTGCCAATGGACGCCCGACGC
AAGCCGCGCAGCAGGCCGTGGCCGCGCTGGCGGATGCGGGCGCGGATGGGCTGGAACCCCGAGATTACGACGCGGACGGC
CTCAAGCGGGCCATCGCGCAGGCCGACTCCGGCACGGCCCTGGCTCCGGAGTCGTTGGATCGGGTGGACAATGCGCTGAC
TGTGGCGATGCGCCAGTACCTGTCGGACCTGCACAAGGGGCGGATCGACCCGCGCCAGATCCACGTGAACTTCTCGGTAG
CGGACGAAACACCGTTCGACCCCGACAGCTATCTGCACGCCGCCGTCGCCGCGAACCGGCTGCCCGCGGCGATTCACGAG
GCGGCGCCATCGTTCCCGCTGTATCCGACGCTGCGCGACGCGCTGAGCCGCTATCGGGCCCTGGCCACCCAGCCGCTCTG
GAACACCCCGCTGCCGACGCCACCGGGCAACAAGCTGGCCATCGGGCAGCCCTATGACGGGCTTGCGCAAATGGCGCAGC
GCCTGGAGGCATTGGGCGATCTGCCCCAAGGCACGCCGGTTCCGAAAAAGTACGAAGGCGCGCTGGTGACCGCGGTCGAG
TCATTCCAGAAGCGGCATGGTCTAGATGCCGACGGCGTCATCGGACAAGGCACGCTGGCGCAACTCAACACAACACCGTC
CGAACGCGTGAAGCAGATCGCGCTGACGATGGAGCGCCTGCGCTGGACACCGTTGACGGCAGGCCCCCGCGTCATCGTCG
TCAACATTCCCGAGTTCATGCTGCGCGCCTATGATTACGTCGACGGAAAGCTGGACATCAAGCTGGAGATGAAGGTCATC
GTCGGCAAGGCGCTCAACACCCGCACGCCGATGTTCCGCGAGGACATGCGCTATATCGAGTTCAGCCCGTACTGGAACGT
GCCGCCATCCATCGCGCGCAGCGAAGTGGTCCCGAAATCGCGACGCGATCCCGGGTATTTCACGCGACAGGGCTTCGAGT
TCGTCTCGGGTGGCCAGGCGATTACCACGCTGTCGTCGGCCAATCTCGATGCGGTGCTGAACGGCCAGATGCGCATCCGG
CAACGGCCCGGCCCGTTGAACGCGCTGGGGGACATCAAGTTCGTCTTCCCGAACAATCAGAACATCTATCTGCACCACAC
ACCGACCCCGCAATTGTTCCAGCGCGGCCGCCGCGATTTCAGCCACGGCTGCATCCGCGTGGAGGAGCCGGTGCAGTTGG
CGAAGTTCGTGCTGCAGGACATGCCCGAGTGGACCGAGGAGCGGATCCGGCAGGCGATGAGCAAGGGAAAGTCCAACACA
ATTGCGTTGAAGCAGCCTTTGCCTGTTGTATTGGCGTACGGCACCGCCATTGCCAGGGCCGATGGACGGGTATATTTTCT
GCCTGATATCTACGGACAGGACAAGCTGCTGGAGCAGGCGCTGCGGCAGCGCAACCCGCCGGCCACCGCACGCGCCGGCA
AGCTCGCGCAGACCACACCATGA

Upstream 100 bases:

>100_bases
GAATAGATTGCGCTAGATCGCGCCAGATCAAGCGCGCCCGCGAGCCGACCTTCGTCTTCGGATACGATGCCATCGTGAGC
CTCTCTCTCAAACTTCCGGA

Downstream 100 bases:

>100_bases
CGCAATCGAAGACTCCCCCGCGCCGCCGCTTTCTGCACCGCGCCAGCGGCCTGATCCTCGGCACCGGCATTGCAGCGCTC
TCCACCGGCGTGGCACGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MPMTATAVISTRPSTPHPRRKRTWMRAALCAWFIGAATSAWAQPLWFANGRPTQAAQQAVAALADAGADGLEPRDYDADG
LKRAIAQADSGTALAPESLDRVDNALTVAMRQYLSDLHKGRIDPRQIHVNFSVADETPFDPDSYLHAAVAANRLPAAIHE
AAPSFPLYPTLRDALSRYRALATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQGTPVPKKYEGALVTAVE
SFQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLRWTPLTAGPRVIVVNIPEFMLRAYDYVDGKLDIKLEMKVI
VGKALNTRTPMFREDMRYIEFSPYWNVPPSIARSEVVPKSRRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIR
QRPGPLNALGDIKFVFPNNQNIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMPEWTEERIRQAMSKGKSNT
IALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLEQALRQRNPPATARAGKLAQTTP

Sequences:

>Translated_540_residues
MPMTATAVISTRPSTPHPRRKRTWMRAALCAWFIGAATSAWAQPLWFANGRPTQAAQQAVAALADAGADGLEPRDYDADG
LKRAIAQADSGTALAPESLDRVDNALTVAMRQYLSDLHKGRIDPRQIHVNFSVADETPFDPDSYLHAAVAANRLPAAIHE
AAPSFPLYPTLRDALSRYRALATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQGTPVPKKYEGALVTAVE
SFQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLRWTPLTAGPRVIVVNIPEFMLRAYDYVDGKLDIKLEMKVI
VGKALNTRTPMFREDMRYIEFSPYWNVPPSIARSEVVPKSRRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIR
QRPGPLNALGDIKFVFPNNQNIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMPEWTEERIRQAMSKGKSNT
IALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLEQALRQRNPPATARAGKLAQTTP
>Mature_539_residues
PMTATAVISTRPSTPHPRRKRTWMRAALCAWFIGAATSAWAQPLWFANGRPTQAAQQAVAALADAGADGLEPRDYDADGL
KRAIAQADSGTALAPESLDRVDNALTVAMRQYLSDLHKGRIDPRQIHVNFSVADETPFDPDSYLHAAVAANRLPAAIHEA
APSFPLYPTLRDALSRYRALATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQGTPVPKKYEGALVTAVES
FQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLRWTPLTAGPRVIVVNIPEFMLRAYDYVDGKLDIKLEMKVIV
GKALNTRTPMFREDMRYIEFSPYWNVPPSIARSEVVPKSRRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIRQ
RPGPLNALGDIKFVFPNNQNIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMPEWTEERIRQAMSKGKSNTI
ALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLEQALRQRNPPATARAGKLAQTTP

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=290, Percent_Identity=39.3103448275862, Blast_Score=200, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59722; Mature: 59591

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMTATAVISTRPSTPHPRRKRTWMRAALCAWFIGAATSAWAQPLWFANGRPTQAAQQAV
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHH
AALADAGADGLEPRDYDADGLKRAIAQADSGTALAPESLDRVDNALTVAMRQYLSDLHKG
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHC
RIDPRQIHVNFSVADETPFDPDSYLHAAVAANRLPAAIHEAAPSFPLYPTLRDALSRYRA
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHH
LATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQGTPVPKKYEGALVTAVE
HHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
SFQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLRWTPLTAGPRVIVVNIPEFM
HHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH
LRAYDYVDGKLDIKLEMKVIVGKALNTRTPMFREDMRYIEFSPYWNVPPSIARSEVVPKS
HHHHHHCCCEEEEEEEEEEEECCHHCCCCCHHHHCCCEEEECCCCCCCHHHHHHHCCCCC
RRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIRQRPGPLNALGDIKFVFPNNQ
CCCCCCHHHCCCHHHCCCCEEEEECCCCCCEEECCCEEEECCCCCCCCCCCEEEEECCCC
NIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMPEWTEERIRQAMSKGKSNT
EEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
IALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLEQALRQRNPPATARAGKLAQTTP
EEECCCCCEEEECCCHHEECCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
PMTATAVISTRPSTPHPRRKRTWMRAALCAWFIGAATSAWAQPLWFANGRPTQAAQQAV
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHH
AALADAGADGLEPRDYDADGLKRAIAQADSGTALAPESLDRVDNALTVAMRQYLSDLHKG
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHC
RIDPRQIHVNFSVADETPFDPDSYLHAAVAANRLPAAIHEAAPSFPLYPTLRDALSRYRA
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHH
LATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQGTPVPKKYEGALVTAVE
HHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
SFQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLRWTPLTAGPRVIVVNIPEFM
HHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH
LRAYDYVDGKLDIKLEMKVIVGKALNTRTPMFREDMRYIEFSPYWNVPPSIARSEVVPKS
HHHHHHCCCEEEEEEEEEEEECCHHCCCCCHHHHCCCEEEECCCCCCCHHHHHHHCCCCC
RRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIRQRPGPLNALGDIKFVFPNNQ
CCCCCCHHHCCCHHHCCCCEEEEECCCCCCEEECCCEEEECCCCCCCCCCCEEEEECCCC
NIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMPEWTEERIRQAMSKGKSNT
EEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
IALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLEQALRQRNPPATARAGKLAQTTP
EEECCCCCEEEECCCHHEECCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]