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The map label for this gene is atpD [H]

Identifier: 94312425

GI number: 94312425

Start: 3784968

End: 3786371

Strand: Reverse

Name: atpD [H]

Synonym: Rmet_3494

Alternate gene names: 94312425

Gene position: 3786371-3784968 (Counterclockwise)

Preceding gene: 94312426

Following gene: 94312424

Centisome position: 96.39

GC content: 62.18

Gene sequence:

>1404_bases
ATGAGTATCGGAAATATTGTGCAGTGCATTGGCGCCGTGGTGGACATCGAGTTCCCGCGCGACGCAATGCCGAAGGTGTA
CGACGCACTCGTGCTCGAAGAGGGCAACGACAAGTCGTTCGCCGAGAAGGGTCTGACCTTCGAAGTGCAGCAACAGCTCG
GCGACGGCGTGGTGCGTACCATTGCCCTGGGCTCGTCGGACGGCCTGCGCCGTGGCATGTCGGTGATGAGCACCGGCGCC
CCCATCTCCGTGCCGGTGGGCCACGGCACGCTGGGCCGCATCATGGACGTGCTGGGTCGCCCGATCGACGAAGCTGGTCC
GATCGAAGCTGACGAAAAGCGCGCGATTCACCAGAAGGCACCGAAGTTCGACGAACTGTCGCCATCGGTTGACCTGCTGG
AAACGGGCATCAAGGTTATCGACCTGGTGTGCCCGTTCGCGAAGGGCGGTAAGGTGGGTCTGTTCGGTGGCGCCGGTGTG
GGCAAGACCGTGAACATGATGGAACTCATCAACAACATCGCCAAGCAGCACAGCGGTCTGTCGGTGTTTGCCGGCGTGGG
CGAGCGTACCCGTGAAGGGAACGACTTCTACCACGAAATGAAGGACTCGAACGTGCTCGACAAGGTGGCCATGGTGTTCG
GCCAGATGAACGAGCCGCCGGGCAACCGTCTGCGCGTGGCGCTGACCGGCCTGACGATGGCCGAGCGCTTCCGTGACGAA
GGCCGCGACATCCTGTTCTTCGTCGACAACATCTACCGCTACACGCTGGCCGGTACCGAAGTGTCGGCACTGCTGGGCCG
TATGCCTTCCGCCGTGGGCTATCAGCCGACGCTGGCTGAAGAAATGGGCAAGCTGCAGGAGCGTATTACGTCGACCAAGA
CTGGCTCGATCACGTCGATCCAGGCCGTGTACGTGCCTGCGGATGACTTGACCGACCCGTCGCCGGCTACCACCTTCCTG
CACCTGGACTCGACCGTCGTGCTGTCGCGTGACATCGCCGCGCTGGGTATCTACCCCGCCGTCGACCCGCTCGACTCGAC
CTCGCGCCAGCTGGATCCGCAAGTCGTGGGTACGGAACACTATGAAGTGGCCCGCCGCGTTCAGCAGACCCTGCAGCGCT
ACAAGGAACTGCGCGACATCATCGCGATTCTGGGCATGGACGAACTGTCGCCGGAAGACAAGCTCGCCGTGTCGCGTGCG
CGTAAGATCCAGCGTTTCCTGTCCCAGCCGTTCCACGTGGCCGAAGTGTTCACGGGTTCGCCGGGCAAGTACGTGCCGCT
GAAGGAAACCATCCGTGGTTTCAAGATGCTGGTGGATGGCGAGTGCGATCACCTGCCCGAGCAGGCGTTCTACATGGTTG
GCTCGATCGACGAAGCCTTCGAGAAGGCCAAGAAGCTTCAGTAA

Upstream 100 bases:

>100_bases
CAAGACCCGTCAGGCAGCGATTACGAAGGAACTGTCGGAAATCGTCAGCGGTGCCGCTGCGGTCTAAGGCGTCAAGAATT
CAAGCTATCGGAGATACGAA

Downstream 100 bases:

>100_bases
GCGGCGTCTTTCGCCTTCATGCGCCGTTGCGGCTGTCCTGGCGAAGTCAGCCGGTGTACGTGGCAGCCGCGAGCATGAGG
GCGAGACACATGCTTCCTGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSIGNIVQCIGAVVDIEFPRDAMPKVYDALVLEEGNDKSFAEKGLTFEVQQQLGDGVVRTIALGSSDGLRRGMSVMSTGA
PISVPVGHGTLGRIMDVLGRPIDEAGPIEADEKRAIHQKAPKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGV
GKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFL
HLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVSRA
RKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ

Sequences:

>Translated_467_residues
MSIGNIVQCIGAVVDIEFPRDAMPKVYDALVLEEGNDKSFAEKGLTFEVQQQLGDGVVRTIALGSSDGLRRGMSVMSTGA
PISVPVGHGTLGRIMDVLGRPIDEAGPIEADEKRAIHQKAPKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGV
GKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFL
HLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVSRA
RKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
>Mature_466_residues
SIGNIVQCIGAVVDIEFPRDAMPKVYDALVLEEGNDKSFAEKGLTFEVQQQLGDGVVRTIALGSSDGLRRGMSVMSTGAP
ISVPVGHGTLGRIMDVLGRPIDEAGPIEADEKRAIHQKAPKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFLH
LDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVSRAR
KIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=66.9491525423729, Blast_Score=631, Evalue=0.0,
Organism=Homo sapiens, GI50345984, Length=326, Percent_Identity=25.4601226993865, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI4757810, Length=326, Percent_Identity=25.4601226993865, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI19913424, Length=317, Percent_Identity=27.4447949526814, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI19913428, Length=433, Percent_Identity=24.9422632794457, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI19913426, Length=396, Percent_Identity=23.989898989899, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=79.6137339055794, Blast_Score=757, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=324, Percent_Identity=29.9382716049383, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=26.4705882352941, Blast_Score=119, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=65.7446808510638, Blast_Score=616, Evalue=1e-177,
Organism=Caenorhabditis elegans, GI17510931, Length=350, Percent_Identity=25.4285714285714, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=384, Percent_Identity=25.2604166666667, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=384, Percent_Identity=25.2604166666667, Blast_Score=109, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=318, Percent_Identity=27.3584905660377, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=350, Percent_Identity=24.2857142857143, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=345, Percent_Identity=23.4782608695652, Blast_Score=82, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=64.8590021691974, Blast_Score=607, Evalue=1e-174,
Organism=Saccharomyces cerevisiae, GI6319370, Length=456, Percent_Identity=24.780701754386, Blast_Score=111, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6319603, Length=376, Percent_Identity=25.2659574468085, Blast_Score=110, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=25.3218884120172, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=65.3191489361702, Blast_Score=617, Evalue=1e-177,
Organism=Drosophila melanogaster, GI28574560, Length=470, Percent_Identity=62.7659574468085, Blast_Score=580, Evalue=1e-166,
Organism=Drosophila melanogaster, GI281361666, Length=420, Percent_Identity=25, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24646341, Length=420, Percent_Identity=25, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136796, Length=420, Percent_Identity=25, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI20129479, Length=314, Percent_Identity=27.7070063694268, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24583988, Length=349, Percent_Identity=25.7879656160458, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583986, Length=349, Percent_Identity=25.7879656160458, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583984, Length=349, Percent_Identity=25.7879656160458, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583992, Length=325, Percent_Identity=26.7692307692308, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24658560, Length=381, Percent_Identity=23.8845144356955, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=45.360824742268, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50978; Mature: 50847

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIGNIVQCIGAVVDIEFPRDAMPKVYDALVLEEGNDKSFAEKGLTFEVQQQLGDGVVRT
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHCCCCHHHHHHHCCCCEEH
IALGSSDGLRRGMSVMSTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIEADEKRAIHQKA
EEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
EEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHC
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSI
CCEEEEEEHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGTEH
EEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHCCCCCCCCCCCHHHHCCCCCCCCHH
YEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHEECC
PGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
CCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SIGNIVQCIGAVVDIEFPRDAMPKVYDALVLEEGNDKSFAEKGLTFEVQQQLGDGVVRT
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHCCCCHHHHHHHCCCCEEH
IALGSSDGLRRGMSVMSTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIEADEKRAIHQKA
EEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
EEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHC
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSI
CCEEEEEEHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGTEH
EEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHCCCCCCCCCCCHHHHCCCCCCCCHH
YEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHEECC
PGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
CCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA