Click here to switch to the map view.

The map label for this gene is ydjI [H]

Identifier: 94312390

GI number: 94312390

Start: 3735583

End: 3736605

Strand: Reverse

Name: ydjI [H]

Synonym: Rmet_3459

Alternate gene names: 94312390

Gene position: 3736605-3735583 (Counterclockwise)

Preceding gene: 94312391

Following gene: 94312389

Centisome position: 95.13

GC content: 63.34

Gene sequence:

>1023_bases
ATGAGCATCGGGTCGTTCATCAGGAAGCAGTTCATCGACATCCTCCAGTGGACGGAGGACACGGACGGCGTGCTGGCGTG
GCGCTATCCGATGGAAGACATGGAGATCCAGTACGGTGGCAGCCTGACCGTGCGTGAATCCCAGATGGCGGTCTTCGTCA
ACGAAGGCAAGATCGCCGACGTGTTCGGCCCCGGCATGTACAAGCTGACCACCCAGACGCTGCCGGTGCTGACGTACCTG
AAGAACTGGGACAAGCTGTTCGAATCGCCGTTCAAGTCGGACGTCTACTTCTTCAGCACCCGCCTGCAGATTGGCCGCAA
GTGGGGCACGGCGCAGCCGATCACGATCCGCGATGCGGACTTCGGCATGGTGCGGCTGCGCGCCTTCGGTCTGTATTCGT
ACAAGATCAGCGATCCGCAGAAGTTCTACACCGAGATCAGCGGCACGCGCGCCGAGTACACGCGCGACGAAGTGGAAGAG
CAGCTGCGCAACCTGCTGATCGCCACGATGACGAACACGCTTGGCGCGTCGTCGGTACCGTTCCTGGACATGGCGGCGAA
CCAGACGCTGATGTCGCAGACGATCCACGAAAAGCTCGCGCCCGAGTTCGAGCGTTATGGCGTAGCGCTCGATAACTTCG
CGGTCACCAATGTCTCCTTGCCAGAGGAACTGCAGAAGGCCATCGACACCCGCATCTCGATGGGGATGATGGGCGACATG
GCCAAGTACACGCAGTACCAGGTGGCCAGCTCGATCCCGCTTGCCGCGCAGAACGAGGGCGGTGTCGCCGGGCTCGGCGC
GGGTCTGGCCGCCGGGGCAGTCATGGGGCAGGCGATGGCTGGCGGACTCGTCGGCGGGGTGGCGGGTGTACCCGCTGCAG
CGCCCGTCGCTCCCGCAACGCCCGCCGCCGAAGATCCGGCGGCGCGGCTGCAGAAGCTCAAGGAGCTGCTCGACAAGAGC
CTGATCTCGCAGGCGGAGTTCGATACGGCCAAGGCGGAAATTCTCAAGAAACTCGTCGGCTGA

Upstream 100 bases:

>100_bases
GGGCTGATGGGCACGATGTCGGTCTCGGTCGGCGTGCTCAATGCCGCGTGCCTGTCCTGAGGCCAGGACGTGAATCATTC
CTTGGGAAGAAGGAGCTGAC

Downstream 100 bases:

>100_bases
TTCCGCTCCATGCAAACGGTCAACTGTCCGGGCTGCGGCGCGGAGGTCCGCTTTCGGTCGTCCGCCGCGGTCATGGCGGT
CTGCGAGTACTGCCACAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSIGSFIRKQFIDILQWTEDTDGVLAWRYPMEDMEIQYGGSLTVRESQMAVFVNEGKIADVFGPGMYKLTTQTLPVLTYL
KNWDKLFESPFKSDVYFFSTRLQIGRKWGTAQPITIRDADFGMVRLRAFGLYSYKISDPQKFYTEISGTRAEYTRDEVEE
QLRNLLIATMTNTLGASSVPFLDMAANQTLMSQTIHEKLAPEFERYGVALDNFAVTNVSLPEELQKAIDTRISMGMMGDM
AKYTQYQVASSIPLAAQNEGGVAGLGAGLAAGAVMGQAMAGGLVGGVAGVPAAAPVAPATPAAEDPAARLQKLKELLDKS
LISQAEFDTAKAEILKKLVG

Sequences:

>Translated_340_residues
MSIGSFIRKQFIDILQWTEDTDGVLAWRYPMEDMEIQYGGSLTVRESQMAVFVNEGKIADVFGPGMYKLTTQTLPVLTYL
KNWDKLFESPFKSDVYFFSTRLQIGRKWGTAQPITIRDADFGMVRLRAFGLYSYKISDPQKFYTEISGTRAEYTRDEVEE
QLRNLLIATMTNTLGASSVPFLDMAANQTLMSQTIHEKLAPEFERYGVALDNFAVTNVSLPEELQKAIDTRISMGMMGDM
AKYTQYQVASSIPLAAQNEGGVAGLGAGLAAGAVMGQAMAGGLVGGVAGVPAAAPVAPATPAAEDPAARLQKLKELLDKS
LISQAEFDTAKAEILKKLVG
>Mature_339_residues
SIGSFIRKQFIDILQWTEDTDGVLAWRYPMEDMEIQYGGSLTVRESQMAVFVNEGKIADVFGPGMYKLTTQTLPVLTYLK
NWDKLFESPFKSDVYFFSTRLQIGRKWGTAQPITIRDADFGMVRLRAFGLYSYKISDPQKFYTEISGTRAEYTRDEVEEQ
LRNLLIATMTNTLGASSVPFLDMAANQTLMSQTIHEKLAPEFERYGVALDNFAVTNVSLPEELQKAIDTRISMGMMGDMA
KYTQYQVASSIPLAAQNEGGVAGLGAGLAAGAVMGQAMAGGLVGGVAGVPAAAPVAPATPAAEDPAARLQKLKELLDKSL
ISQAEFDTAKAEILKKLVG

Specific function: Unknown

COG id: COG4260

COG function: function code S; Putative virion core protein (lumpy skin disease virus)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 37133; Mature: 37002

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIGSFIRKQFIDILQWTEDTDGVLAWRYPMEDMEIQYGGSLTVRESQMAVFVNEGKIAD
CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCEEEEECCEEEEEEECCCEEE
VFGPGMYKLTTQTLPVLTYLKNWDKLFESPFKSDVYFFSTRLQIGRKWGTAQPITIRDAD
ECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCEEEECCC
FGMVRLRAFGLYSYKISDPQKFYTEISGTRAEYTRDEVEEQLRNLLIATMTNTLGASSVP
CCEEEHEEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FLDMAANQTLMSQTIHEKLAPEFERYGVALDNFAVTNVSLPEELQKAIDTRISMGMMGDM
HHHHHHHHHHHHHHHHHHHCCHHHHHCCEECCEEEECCCCHHHHHHHHHHHHHHHHHHHH
AKYTQYQVASSIPLAAQNEGGVAGLGAGLAAGAVMGQAMAGGLVGGVAGVPAAAPVAPAT
HHHHHHHHHHCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PAAEDPAARLQKLKELLDKSLISQAEFDTAKAEILKKLVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SIGSFIRKQFIDILQWTEDTDGVLAWRYPMEDMEIQYGGSLTVRESQMAVFVNEGKIAD
CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCEEEEECCEEEEEEECCCEEE
VFGPGMYKLTTQTLPVLTYLKNWDKLFESPFKSDVYFFSTRLQIGRKWGTAQPITIRDAD
ECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCEEEECCC
FGMVRLRAFGLYSYKISDPQKFYTEISGTRAEYTRDEVEEQLRNLLIATMTNTLGASSVP
CCEEEHEEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FLDMAANQTLMSQTIHEKLAPEFERYGVALDNFAVTNVSLPEELQKAIDTRISMGMMGDM
HHHHHHHHHHHHHHHHHHHCCHHHHHCCEECCEEEECCCCHHHHHHHHHHHHHHHHHHHH
AKYTQYQVASSIPLAAQNEGGVAGLGAGLAAGAVMGQAMAGGLVGGVAGVPAAAPVAPAT
HHHHHHHHHHCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PAAEDPAARLQKLKELLDKSLISQAEFDTAKAEILKKLVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]