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The map label for this gene is ccsA [H]

Identifier: 94312213

GI number: 94312213

Start: 3556490

End: 3557713

Strand: Reverse

Name: ccsA [H]

Synonym: Rmet_3282

Alternate gene names: 94312213

Gene position: 3557713-3556490 (Counterclockwise)

Preceding gene: 94312214

Following gene: 94312212

Centisome position: 90.57

GC content: 61.76

Gene sequence:

>1224_bases
ATGTCCTCGAATGTGAATCACGTCAATCCTGGCCTGACGCCGCGGCGTGCCGCGGCAACCGACGATGTGTCCCGTGACGC
TGCCGGCCAGGACACCGCCTATCTCGAACCTTCGTTTCTGAGCCGCCTGGGCTGGACCGACTGGGTCTTCGCGCTGCTGC
TTGTGGTCGGCGCCGGGTTTGCGCTCTCGCGCTACGGCCAGTGGATGAACGTCTATGACAAGGGCGTGCTGATTGCCGCA
GTGCCGACGTTCGCGCTGCTGGGCTGGCACTGGAAGCCCGTCCGTCTGCTGATGATCGGCATCGCGGCGTTTTCGCTGTT
CGCGATCCAACTCTATCAGGGCGACCTCGCGCGCGCAGAGCAGGCTTTCTTCCTGAAGTACTTCCTGTCGAGCCAGTCGG
CCATCCTCTGGATGAGTGCGCTGGTGTTCCTCTCGACCCTGTTCTACTGGGTTGGACTGATTTCGCGGTCGGAAACCGGC
TACAGCATTGGCAGCAAGCTCTGCTGGGCTGCGGTCGTGCTGGGCTTCACGGGTCTGATGGTGCGGTGGTACGAGTCGTA
CCTGATCGGCGCGGACATCGGCCATATTCCAATCTCGAACCTCTATGAGGTTTTCGTTCTCTTTTCGCTGATCACGTCCC
TGTTTTATTTGTACTACCAGCGCCGCTACGCGACCCGCGCGCTTGGGCCGTTCGTGATGCTCGTGGTGTCCGCGGCAGTC
GGTTTCTTGCTGTGGTACACGGTCAGCCGCAATGCCCAGGAGATCCAGCCGTTGGTGCCCGCCCTGCAGAGCTGGTGGAT
GAAGATCCACGTGCCGGCGAACTTCATCGGATACGGCACGTTCGCGCTGGCGGCAATGGTGTCGGTGGCCTACCTGCTCA
AGCAACGTGGCATTCTGGCCGAGCGTCTGCCTTCGCTCGAGCTGCTCGACGACGTCATGTACAAGGCGATCGCGGTCGGG
TTCGCCTTCTTCACGATCGCAACGATCCTCGGCGCACTGTGGGCTGCCGAGGCTTGGGGTGGCTACTGGAGCTGGGATCC
GAAAGAGACCTGGGCGCTGATCGTCTGGCTCAACTATGCAGCTTGGCTGCACATGCGCCTGATGAAGGGGCTGCGCGGTA
CGGTTGCTGCATGGTGGGCGCTGGTTGGCCTGTTGGTGACGACCTTCGCCTTCCTCGGTGTGAACATGTTCCTATCGGGG
CTGCACAGCTACGGCGAACTCTGA

Upstream 100 bases:

>100_bases
CAAAGTACAAGAGCATGAACCGGCGTCAGCCTGTGCGGAGACCCGCGGGCGGGGGCGCAGCAGATAAAACAGGCGCGTAG
CGCCAAAGAGCAGGAATGCC

Downstream 100 bases:

>100_bases
TCCGCCAGACCATCTATCCAGATGACGAAGCCTGCCGATTCCGGCAGGCTTTTTTGTCTTCTGAGCGGACCCTGAACATC
GGACAGGTGCGAACCGTCGC

Product: ABC-type transport system involved in cytochrome c biogenesis permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSSNVNHVNPGLTPRRAAATDDVSRDAAGQDTAYLEPSFLSRLGWTDWVFALLLVVGAGFALSRYGQWMNVYDKGVLIAA
VPTFALLGWHWKPVRLLMIGIAAFSLFAIQLYQGDLARAEQAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLISRSETG
YSIGSKLCWAAVVLGFTGLMVRWYESYLIGADIGHIPISNLYEVFVLFSLITSLFYLYYQRRYATRALGPFVMLVVSAAV
GFLLWYTVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSLELLDDVMYKAIAVG
FAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALVGLLVTTFAFLGVNMFLSG
LHSYGEL

Sequences:

>Translated_407_residues
MSSNVNHVNPGLTPRRAAATDDVSRDAAGQDTAYLEPSFLSRLGWTDWVFALLLVVGAGFALSRYGQWMNVYDKGVLIAA
VPTFALLGWHWKPVRLLMIGIAAFSLFAIQLYQGDLARAEQAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLISRSETG
YSIGSKLCWAAVVLGFTGLMVRWYESYLIGADIGHIPISNLYEVFVLFSLITSLFYLYYQRRYATRALGPFVMLVVSAAV
GFLLWYTVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSLELLDDVMYKAIAVG
FAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALVGLLVTTFAFLGVNMFLSG
LHSYGEL
>Mature_406_residues
SSNVNHVNPGLTPRRAAATDDVSRDAAGQDTAYLEPSFLSRLGWTDWVFALLLVVGAGFALSRYGQWMNVYDKGVLIAAV
PTFALLGWHWKPVRLLMIGIAAFSLFAIQLYQGDLARAEQAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLISRSETGY
SIGSKLCWAAVVLGFTGLMVRWYESYLIGADIGHIPISNLYEVFVLFSLITSLFYLYYQRRYATRALGPFVMLVVSAAVG
FLLWYTVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSLELLDDVMYKAIAVGF
AFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALVGLLVTTFAFLGVNMFLSGL
HSYGEL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 45594; Mature: 45463

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSNVNHVNPGLTPRRAAATDDVSRDAAGQDTAYLEPSFLSRLGWTDWVFALLLVVGAGF
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCH
ALSRYGQWMNVYDKGVLIAAVPTFALLGWHWKPVRLLMIGIAAFSLFAIQLYQGDLARAE
HHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
QAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLISRSETGYSIGSKLCWAAVVLGFTGLM
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VRWYESYLIGADIGHIPISNLYEVFVLFSLITSLFYLYYQRRYATRALGPFVMLVVSAAV
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFLLWYTVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILA
HHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
ERLPSLELLDDVMYKAIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
AWLHMRLMKGLRGTVAAWWALVGLLVTTFAFLGVNMFLSGLHSYGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA