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The map label for this gene is 94312165

Identifier: 94312165

GI number: 94312165

Start: 3510309

End: 3511514

Strand: Reverse

Name: 94312165

Synonym: Rmet_3234

Alternate gene names: NA

Gene position: 3511514-3510309 (Counterclockwise)

Preceding gene: 94312166

Following gene: 94312163

Centisome position: 89.39

GC content: 61.44

Gene sequence:

>1206_bases
ATGCGTCGCCCAAACACTTGGGCAACCAAGATTTCCCAATCAGTTGACAAGGAAAGTGTCGATATGAAGATGAAACTGTT
TGCTGCTGCCGTCGCCGCTCTGGCCGCTGGTGGCGCCTATGCCCAGTCGAGCGTGACCCTGTACGGTGTGGTTGACGCTG
GCGTCGAGTACGCTAACCACCAGCCGGGCGTGTCCGGTAGCCACGACGTCGTGCGCCTGAACTCGGGCGGCATGTCGGGC
AGCCGTTGGGGCCTGCGTGGCGTTGAAGACCTGGGCGGTGGCCTGAAGGGCGTTTTCGTGCTGGAAAGCGGTTTCAACGT
TGACACCGGTACGTCGGGCCAAAACAACCGTCTGTTCGGTCGTCAAGCCTTCGTCGGTATGCAAAGCCAGTTCGGCACGC
TGACCCTGGGTCGCCACCAGACGCCGTTCTATGACTTCGGTCTGGCCTTCGACCCGATGGCCATCTCGCCGAACTACTCG
ATCACGGCTCAAGCTCCGGAATTCCAGCAACGTGCTGACAACTCGATCAAGTACATCGGTACGTTCGGTGGCCTGACCGG
CTCGCTGCTGTACAGCACCGGCTCGAACACGGCTGGCACGGCTAGCGTCTACCAAGGTATCAGCGGCGAAGTTCCGGGTA
ACTACCACCTGGGCCGCGAGATGAGCGCAAGCGTGATGTACAACGGTGGCCCGTTCTCCGTTGGCGCCATCTATGACGAA
ACCAACGTTGGTATCGCTGCTGCTGACGGCGCCAAGATCCGCCGCACGTCGATCGCTGGTACGTACGCCTTCGGCCCGGC
CAAGGTGTTCGCTGGCTACCGTTACGCTCACGCTCAAGGCGGCGCAGTTCTGCCGGGTGGTGTGAACACCGTTGACGGCG
CTGCGAAGATTGCGAACGTCTCGAACCTGTACTGGCTGGGCATGGGTTACCAGCTGACCCCGGCTCTGTCGCTGACCGGC
GCCGCGTACTACCAAGACTTCCGCAACACCGGTGCTGATCCGTGGAGCTTCGTTGTGTCGACGGACTACGCTTTCTCGAA
GCGTACGGACGCCTACTTCAACGTGGCCTACACGAAGAACAAGGACGGCTCGACTCTGGGCACGTCGTCGGCTAGCCCGG
GCAGCCTCGGTGGCTCCGGCTTCGGCACGACTCTGGGTTCGTACAACCAGTTCGGCGCCATGGTTGGCCTGCGCCACAAG
TTCTAA

Upstream 100 bases:

>100_bases
TTCATCACAACAAGAAGCGTCGGTAAACCGCGTTTACGGCGAAAAAGACTTCTGGCGAGCAAGGGGGGTGACACATAATA
CGACGCAGACGTGAAGGTGA

Downstream 100 bases:

>100_bases
TTTGACGCGGGTGTAAGCCCGCTTCAGATTGGCTTCAGAACGCCGGCATCCTTTCGGATGCCGGCGTTTTGTTTTGTCCG
GGGCTTTGATTGTGTGGGCA

Product: outer membrane protein (porin)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRRPNTWATKISQSVDKESVDMKMKLFAAAVAALAAGGAYAQSSVTLYGVVDAGVEYANHQPGVSGSHDVVRLNSGGMSG
SRWGLRGVEDLGGGLKGVFVLESGFNVDTGTSGQNNRLFGRQAFVGMQSQFGTLTLGRHQTPFYDFGLAFDPMAISPNYS
ITAQAPEFQQRADNSIKYIGTFGGLTGSLLYSTGSNTAGTASVYQGISGEVPGNYHLGREMSASVMYNGGPFSVGAIYDE
TNVGIAAADGAKIRRTSIAGTYAFGPAKVFAGYRYAHAQGGAVLPGGVNTVDGAAKIANVSNLYWLGMGYQLTPALSLTG
AAYYQDFRNTGADPWSFVVSTDYAFSKRTDAYFNVAYTKNKDGSTLGTSSASPGSLGGSGFGTTLGSYNQFGAMVGLRHK
F

Sequences:

>Translated_401_residues
MRRPNTWATKISQSVDKESVDMKMKLFAAAVAALAAGGAYAQSSVTLYGVVDAGVEYANHQPGVSGSHDVVRLNSGGMSG
SRWGLRGVEDLGGGLKGVFVLESGFNVDTGTSGQNNRLFGRQAFVGMQSQFGTLTLGRHQTPFYDFGLAFDPMAISPNYS
ITAQAPEFQQRADNSIKYIGTFGGLTGSLLYSTGSNTAGTASVYQGISGEVPGNYHLGREMSASVMYNGGPFSVGAIYDE
TNVGIAAADGAKIRRTSIAGTYAFGPAKVFAGYRYAHAQGGAVLPGGVNTVDGAAKIANVSNLYWLGMGYQLTPALSLTG
AAYYQDFRNTGADPWSFVVSTDYAFSKRTDAYFNVAYTKNKDGSTLGTSSASPGSLGGSGFGTTLGSYNQFGAMVGLRHK
F
>Mature_401_residues
MRRPNTWATKISQSVDKESVDMKMKLFAAAVAALAAGGAYAQSSVTLYGVVDAGVEYANHQPGVSGSHDVVRLNSGGMSG
SRWGLRGVEDLGGGLKGVFVLESGFNVDTGTSGQNNRLFGRQAFVGMQSQFGTLTLGRHQTPFYDFGLAFDPMAISPNYS
ITAQAPEFQQRADNSIKYIGTFGGLTGSLLYSTGSNTAGTASVYQGISGEVPGNYHLGREMSASVMYNGGPFSVGAIYDE
TNVGIAAADGAKIRRTSIAGTYAFGPAKVFAGYRYAHAQGGAVLPGGVNTVDGAAKIANVSNLYWLGMGYQLTPALSLTG
AAYYQDFRNTGADPWSFVVSTDYAFSKRTDAYFNVAYTKNKDGSTLGTSSASPGSLGGSGFGTTLGSYNQFGAMVGLRHK
F

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41950; Mature: 41950

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPNTWATKISQSVDKESVDMKMKLFAAAVAALAAGGAYAQSSVTLYGVVDAGVEYANH
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHCCC
QPGVSGSHDVVRLNSGGMSGSRWGLRGVEDLGGGLKGVFVLESGFNVDTGTSGQNNRLFG
CCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEC
RQAFVGMQSQFGTLTLGRHQTPFYDFGLAFDPMAISPNYSITAQAPEFQQRADNSIKYIG
HHHHCCCCCCCCEEEECCCCCCCEECCCEECCEEECCCCEEEECCCHHHHHCCCCEEEEE
TFGGLTGSLLYSTGSNTAGTASVYQGISGEVPGNYHLGREMSASVMYNGGPFSVGAIYDE
ECCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCEEEEECCCCEEEEEEEEC
TNVGIAAADGAKIRRTSIAGTYAFGPAKVFAGYRYAHAQGGAVLPGGVNTVDGAAKIANV
CCCCEEECCCCEEEEEEECEEEECCHHHHHCCEEEEECCCCEECCCCCCCCCCHHHHCCC
SNLYWLGMGYQLTPALSLTGAAYYQDFRNTGADPWSFVVSTDYAFSKRTDAYFNVAYTKN
CEEEEEECCEEECCCEEECHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEC
KDGSTLGTSSASPGSLGGSGFGTTLGSYNQFGAMVGLRHKF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCC
>Mature Secondary Structure
MRRPNTWATKISQSVDKESVDMKMKLFAAAVAALAAGGAYAQSSVTLYGVVDAGVEYANH
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHCCC
QPGVSGSHDVVRLNSGGMSGSRWGLRGVEDLGGGLKGVFVLESGFNVDTGTSGQNNRLFG
CCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEC
RQAFVGMQSQFGTLTLGRHQTPFYDFGLAFDPMAISPNYSITAQAPEFQQRADNSIKYIG
HHHHCCCCCCCCEEEECCCCCCCEECCCEECCEEECCCCEEEECCCHHHHHCCCCEEEEE
TFGGLTGSLLYSTGSNTAGTASVYQGISGEVPGNYHLGREMSASVMYNGGPFSVGAIYDE
ECCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCEEEEECCCCEEEEEEEEC
TNVGIAAADGAKIRRTSIAGTYAFGPAKVFAGYRYAHAQGGAVLPGGVNTVDGAAKIANV
CCCCEEECCCCEEEEEEECEEEECCHHHHHCCEEEEECCCCEECCCCCCCCCCHHHHCCC
SNLYWLGMGYQLTPALSLTGAAYYQDFRNTGADPWSFVVSTDYAFSKRTDAYFNVAYTKN
CEEEEEECCEEECCCEEECHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEC
KDGSTLGTSSASPGSLGGSGFGTTLGSYNQFGAMVGLRHKF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]