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The map label for this gene is yccS [C]

Identifier: 94312118

GI number: 94312118

Start: 3459852

End: 3462224

Strand: Reverse

Name: yccS [C]

Synonym: Rmet_3187

Alternate gene names: 94312118

Gene position: 3462224-3459852 (Counterclockwise)

Preceding gene: 94312119

Following gene: 335055654

Centisome position: 88.14

GC content: 66.5

Gene sequence:

>2373_bases
ATGGAATACGCGCACGATCCCCGCACGTTCCTTTACTCGCACTACATCTACCGTGGCCTGCGCTCGGCCACGGGGGTCAT
CGGCATGACGCTGCTGGCCATGCAGTTCATGGACCTGCCCAGCGCGATGGTCGTCTCGATGGGCGCGCTGTGCACCAGCC
TGATGGACCTGCCGAGCCCGCTGAACCACAAGTTCAACGAGATGCTGGCTAGCGTGCTGCTCTGCACGGCGGTGACCGTG
GTGGTGGCGCTGGCCACGCCGTTCCCGCGCGTGATGCCGTTCGTGCTGGTGCTGGTCACATTCCTGGCCGGCATGATGAC
GGTCTACGGCAACAAGACCATGCCGTTGCAGTTCTCGATGTTGTTCGTCATGACGCTGACGATCAACGAGGAATTCGTCG
TGCGCACGGCCTTGTCTCACGCGGGACTGTTCGGCGTGGGCGCACTGGGCTACTTGCTCTACGCGATCAGCGTGGCCTGG
TTCATGGAACGCCGCACGCGGCAGCAGATCCTGGCGGAGTCGCTCTACGAGATGGCGGCCTACCTCGACATCAAGGCGGG
GTTCTACGACGCCGGCACCGACTACGACGAGCTGTTCAACCGGCTGGTGCGCCAGCAGATCGTGGTGGCCGAGCGCCAGC
AGGCTGCGCGCGACATGGTGCTGCGCGGCAACAAGACACCGTTCGATGGGCTGCTGGTGCGGGTGCACCTGCGCATGCTG
GAACTCTACGAGTATCTGCTGTCGACCAATACCGACTATCCGTTGCTGCGGCAGACGTTCGGCGGCACGCCGGTGCTCGA
CGCGTTGCGCCGGCTCGTGCGCGGGCTCTGCAAGGACCTCGAGGAAATCGCCTACGACATCACGCGCGGGCGGCCGTCGT
ACAGCGCGCACGACTACGCGGCGGACCTGCGCGCGGTGGAAAGCGAGATCGCCCAGCTGCGCCACCTCAATGTGTCGGCC
ACGGCGATGACGGCACTGGTCGATACCTTCGACATGATTCGGGGCGCGGTCACGCTGATGGGGCAATTGCACGAGGCTTC
GCGCACGCCGGTGGAGCCGGCCCAGGTGCTGCCTGGTTCGGACATGACACCGTTCCTGACGCGCCAGAAGTACGAACTGG
GCGTGGTGCTCGACAGCCTGAACTGGCGCTCGCCGGCGTTCCGGTTCGCGGTGCGCATCACGCTGGCGGTGGGGACTGGG
CTATTCCTGGGCGAGCATTTGCCGTACGCGTCGCACAGCTACTGGATCCTGCTGACCATCGTGGTGATCCTGAAGCCGAA
CTTCAGCATGACCAAGCAGCGCTACAACGATCGTCTGATCGGCACGCTGATCGGCTGCATCATCAGCGTCGGCATCCTGC
ACTGGATTCATGCGCCGCTGGTGCTGTTGGGTGTGCTCTATCTGGCGCTCGTGGCCAGCGCGGCGTTTTCCACGATCAAG
TACCGCTACACCGCGATTGCCGCCTGTGTGCAGGTGCTGATCCAGATAAACCTGCTGATTCCGGGCAGCCAGACGGTGGT
GGGCGAGCGGCTGGTCGATACCGTGATTGGCGGGATCATCGCGTCCGTGTTCAGCTTCGTGCTGCCGAGCTGGGAGTACC
GCGCTATTCCGAAGCTGGTGGAGAACGTGCTGCAGGCCAACCGTCGCTACATTGCGGCCACGCGGGATCTGCTGCTGCGC
AAGGCGCAGGACGACTTCGCATACCGTGTGCAGCGCAAGCAGTTCATGGATGCGCTGTCGGCGCTGATCTCGTCGTTCCA
GCGCATGCTCGACGAGCCGCGCAGCCGGCAGCGCGCGGTGGATAACTTGAGCCGCTTCATCGTGCAGAACTACCTGGTGG
CCGCGCACGTGGCCGCTGCGCGGATCCAGGTGCGGCAGCACTACGGCGAACTGGATGTGCCGGCAGCCGAGGCCTCGATT
GAGCAGGCGACCGAGGCGGCCGTGCGGTCGTTGACGCTGGCCAGCGAGCGGCTGGCGGGCGAGGAACGGCATGGGGCGCG
TGGCGCGGGGTTCATCCGCACACCGACAGAGGCGGCGGTGGCCGGCGTGGGCATGGTCCATCAGAGCGCGCCGTCCTCGG
CCACGGATACCACGGACGATGACGCGAGCGAGCGCCGCGCGCGCATCGCGGACTCGGCGGATCGTCGCAAGGCCGAGGTG
CTGGCGCAGGCCGCGGCGGCCGGCGAGATCGGTGCGGCCGAGCCGATTCAGCGGTCGCAGGACCAGCGTGCCGAGTCCAC
CGCGAGTGCTTCCGGGCGTGCCGCCAATGCGGTGCTGGAGCGCCGCCTGCGCGCGCTGCGCGAGGACGCGGCGAAGATCG
CGCTGCGTACCGGCGCGATCGGCCGGGCGATCCGGACGCCGTGGAAGGGGTGA

Upstream 100 bases:

>100_bases
TGGCTTGGCCAGTAACCTGCCTGCCACCCTACCGTCGCCGCCCTGGCGACGGCAGGGCTCCCCTTTGACCCGGCCGACCC
GGCATTTGTAATCGCCCCCC

Downstream 100 bases:

>100_bases
TCGAACGGAATCGTGACGGGTTCTCTCTCCTCTCCCATGTGGCGGGCGAGGAGAGAAAACCCGCGGCATTGACGCTGACC
TAGACCTTCCCAGTCGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MEYAHDPRTFLYSHYIYRGLRSATGVIGMTLLAMQFMDLPSAMVVSMGALCTSLMDLPSPLNHKFNEMLASVLLCTAVTV
VVALATPFPRVMPFVLVLVTFLAGMMTVYGNKTMPLQFSMLFVMTLTINEEFVVRTALSHAGLFGVGALGYLLYAISVAW
FMERRTRQQILAESLYEMAAYLDIKAGFYDAGTDYDELFNRLVRQQIVVAERQQAARDMVLRGNKTPFDGLLVRVHLRML
ELYEYLLSTNTDYPLLRQTFGGTPVLDALRRLVRGLCKDLEEIAYDITRGRPSYSAHDYAADLRAVESEIAQLRHLNVSA
TAMTALVDTFDMIRGAVTLMGQLHEASRTPVEPAQVLPGSDMTPFLTRQKYELGVVLDSLNWRSPAFRFAVRITLAVGTG
LFLGEHLPYASHSYWILLTIVVILKPNFSMTKQRYNDRLIGTLIGCIISVGILHWIHAPLVLLGVLYLALVASAAFSTIK
YRYTAIAACVQVLIQINLLIPGSQTVVGERLVDTVIGGIIASVFSFVLPSWEYRAIPKLVENVLQANRRYIAATRDLLLR
KAQDDFAYRVQRKQFMDALSALISSFQRMLDEPRSRQRAVDNLSRFIVQNYLVAAHVAAARIQVRQHYGELDVPAAEASI
EQATEAAVRSLTLASERLAGEERHGARGAGFIRTPTEAAVAGVGMVHQSAPSSATDTTDDDASERRARIADSADRRKAEV
LAQAAAAGEIGAAEPIQRSQDQRAESTASASGRAANAVLERRLRALREDAAKIALRTGAIGRAIRTPWKG

Sequences:

>Translated_790_residues
MEYAHDPRTFLYSHYIYRGLRSATGVIGMTLLAMQFMDLPSAMVVSMGALCTSLMDLPSPLNHKFNEMLASVLLCTAVTV
VVALATPFPRVMPFVLVLVTFLAGMMTVYGNKTMPLQFSMLFVMTLTINEEFVVRTALSHAGLFGVGALGYLLYAISVAW
FMERRTRQQILAESLYEMAAYLDIKAGFYDAGTDYDELFNRLVRQQIVVAERQQAARDMVLRGNKTPFDGLLVRVHLRML
ELYEYLLSTNTDYPLLRQTFGGTPVLDALRRLVRGLCKDLEEIAYDITRGRPSYSAHDYAADLRAVESEIAQLRHLNVSA
TAMTALVDTFDMIRGAVTLMGQLHEASRTPVEPAQVLPGSDMTPFLTRQKYELGVVLDSLNWRSPAFRFAVRITLAVGTG
LFLGEHLPYASHSYWILLTIVVILKPNFSMTKQRYNDRLIGTLIGCIISVGILHWIHAPLVLLGVLYLALVASAAFSTIK
YRYTAIAACVQVLIQINLLIPGSQTVVGERLVDTVIGGIIASVFSFVLPSWEYRAIPKLVENVLQANRRYIAATRDLLLR
KAQDDFAYRVQRKQFMDALSALISSFQRMLDEPRSRQRAVDNLSRFIVQNYLVAAHVAAARIQVRQHYGELDVPAAEASI
EQATEAAVRSLTLASERLAGEERHGARGAGFIRTPTEAAVAGVGMVHQSAPSSATDTTDDDASERRARIADSADRRKAEV
LAQAAAAGEIGAAEPIQRSQDQRAESTASASGRAANAVLERRLRALREDAAKIALRTGAIGRAIRTPWKG
>Mature_790_residues
MEYAHDPRTFLYSHYIYRGLRSATGVIGMTLLAMQFMDLPSAMVVSMGALCTSLMDLPSPLNHKFNEMLASVLLCTAVTV
VVALATPFPRVMPFVLVLVTFLAGMMTVYGNKTMPLQFSMLFVMTLTINEEFVVRTALSHAGLFGVGALGYLLYAISVAW
FMERRTRQQILAESLYEMAAYLDIKAGFYDAGTDYDELFNRLVRQQIVVAERQQAARDMVLRGNKTPFDGLLVRVHLRML
ELYEYLLSTNTDYPLLRQTFGGTPVLDALRRLVRGLCKDLEEIAYDITRGRPSYSAHDYAADLRAVESEIAQLRHLNVSA
TAMTALVDTFDMIRGAVTLMGQLHEASRTPVEPAQVLPGSDMTPFLTRQKYELGVVLDSLNWRSPAFRFAVRITLAVGTG
LFLGEHLPYASHSYWILLTIVVILKPNFSMTKQRYNDRLIGTLIGCIISVGILHWIHAPLVLLGVLYLALVASAAFSTIK
YRYTAIAACVQVLIQINLLIPGSQTVVGERLVDTVIGGIIASVFSFVLPSWEYRAIPKLVENVLQANRRYIAATRDLLLR
KAQDDFAYRVQRKQFMDALSALISSFQRMLDEPRSRQRAVDNLSRFIVQNYLVAAHVAAARIQVRQHYGELDVPAAEASI
EQATEAAVRSLTLASERLAGEERHGARGAGFIRTPTEAAVAGVGMVHQSAPSSATDTTDDDASERRARIADSADRRKAEV
LAQAAAAGEIGAAEPIQRSQDQRAESTASASGRAANAVLERRLRALREDAAKIALRTGAIGRAIRTPWKG

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=622, Percent_Identity=22.3472668810289, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082248, Length=546, Percent_Identity=23.8095238095238, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87317; Mature: 87317

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00636 DNAJ_1 ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCC
>Mature Secondary Structure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HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]