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The map label for this gene is dppB [H]

Identifier: 94312088

GI number: 94312088

Start: 3420975

End: 3421952

Strand: Reverse

Name: dppB [H]

Synonym: Rmet_3157

Alternate gene names: 94312088

Gene position: 3421952-3420975 (Counterclockwise)

Preceding gene: 94312089

Following gene: 94312087

Centisome position: 87.11

GC content: 61.96

Gene sequence:

>978_bases
ATGCTGGTCTTCATCATCCGGCGGCTGATGCAGAGCGTGGTTGTGCTCCTCGTCATGTCGCTGCTCGTGTTTCTTGGCGT
CTTCGCGATCGGGAATCCGGTCGATATCCTGATCAGTCCGCAGGCGGACCAGGAAGACATCAAACGTACGATCGCCGCGC
TCGGTCTCGACAAGCCGCTTTGGGAGCAATACTGGATCTTCCTGCAGAACGCGCTGCACGGTAACCTCGGCACCTCGTTC
GCGCACGGCACGCCTGCGCTCAAGCTGATCTTCGAGCGGATGCCCGCCACGCTGGAGCTGGCCGTGTGCGCGATCCTGCT
GGCGATCGTGCTCGGCATTCCGCTGGGCTTGTGGGCCGGGCTCCGGCCGAATGGCATCGCCGGCAAGTCGATCATGACCG
TGTCGATCCTCGGCTTTTCCCTGCCCACGTTCTGGGTGGGCCTGATGCTGATCATGGTCTGCGCGGTACAGCTTGGTTGG
CTGCCATCCAACGGCCGGGGAGAAACGGTGCGCGTGCTGGGTGTGCCGCTGAGCTTTCTGACCGTGGACGGTATCCGCCA
CCTGATCCTGCCGGCCGTCACGCTGTCGCTGCTGAATATCGCGATGGTGATCCGCCTGACACGCGCCGGCACGCAGGAGG
CGATGCTGCAGGACTACGTGAAGTTCGCGCGCGCCAAGGGCCTGTCGAACACCCGCATCGTCGGGGTGCACGTGCTGAAG
AACATCATGATTCCGATCGTGACCGTGATCGCGCTGCAGTTCGGGTCGATCATCGCCTTCGCGATCGTCACGGAGTCCAT
TTTTGCCTGGCCCGGCATGGGCAAGCTCATCATCGACTCGATCCAGTTGCTGGACCGCCCGGTGATCGTTGCCTACCTGA
TGGTGATCGTGACGTTGTTCATCCTGATCAACCTGCTGGTCGACATCATCTACAGCATGCTCGATCCGCGCGTGCGGATT
GCCGACAACAAGGGCTGA

Upstream 100 bases:

>100_bases
GTCCATGCAGCCGGGGCAATCCGCCCACGCCTTCCCCCGTGGGCCGCGAACACGCTGACGCGCCGCATGCGGTCGCCAGC
GAAAGGATAGTGGTAAGAAC

Downstream 100 bases:

>100_bases
GCCATGAGTACTTCGACCGTACCGCAAAACGCGGCCAAGGCGGCCGGTACCGCCAAAGAGCAGACGCCGTTCCGCCGCTT
CGCCAGGCAGTTCATGGAAA

Product: dipeptide ABC transporter membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLVFIIRRLMQSVVVLLVMSLLVFLGVFAIGNPVDILISPQADQEDIKRTIAALGLDKPLWEQYWIFLQNALHGNLGTSF
AHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAGLRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVCAVQLGW
LPSNGRGETVRVLGVPLSFLTVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLFILINLLVDIIYSMLDPRVRI
ADNKG

Sequences:

>Translated_325_residues
MLVFIIRRLMQSVVVLLVMSLLVFLGVFAIGNPVDILISPQADQEDIKRTIAALGLDKPLWEQYWIFLQNALHGNLGTSF
AHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAGLRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVCAVQLGW
LPSNGRGETVRVLGVPLSFLTVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLFILINLLVDIIYSMLDPRVRI
ADNKG
>Mature_325_residues
MLVFIIRRLMQSVVVLLVMSLLVFLGVFAIGNPVDILISPQADQEDIKRTIAALGLDKPLWEQYWIFLQNALHGNLGTSF
AHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAGLRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVCAVQLGW
LPSNGRGETVRVLGVPLSFLTVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLFILINLLVDIIYSMLDPRVRI
ADNKG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=38.3928571428571, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=37.5, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1789888, Length=325, Percent_Identity=34.1538461538462, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=36.6300366300366, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1787761, Length=301, Percent_Identity=36.5448504983389, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=29.4117647058824, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1788504, Length=283, Percent_Identity=26.1484098939929, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35521; Mature: 35521

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFIIRRLMQSVVVLLVMSLLVFLGVFAIGNPVDILISPQADQEDIKRTIAALGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCHH
WEQYWIFLQNALHGNLGTSFAHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAG
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
LRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVCAVQLGWLPSNGRGETVRVLGVPLSFL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHH
TVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
ILINLLVDIIYSMLDPRVRIADNKG
HHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MLVFIIRRLMQSVVVLLVMSLLVFLGVFAIGNPVDILISPQADQEDIKRTIAALGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCHH
WEQYWIFLQNALHGNLGTSFAHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAG
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
LRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVCAVQLGWLPSNGRGETVRVLGVPLSFL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHH
TVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
ILINLLVDIIYSMLDPRVRIADNKG
HHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]