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The map label for this gene is tnmA [C]

Identifier: 94312073

GI number: 94312073

Start: 3405091

End: 3406530

Strand: Reverse

Name: tnmA [C]

Synonym: Rmet_3142

Alternate gene names: 94312073

Gene position: 3406530-3405091 (Counterclockwise)

Preceding gene: 335055649

Following gene: 94312072

Centisome position: 86.72

GC content: 65.56

Gene sequence:

>1440_bases
ATGTCACTATCGATTGATCATCGCAACCGATGGGCGCGCTTGCGCTTCTCGGTCATTGGCCCTTTGCTGGCTTCGCCGCC
TGCCAAAGGAGAATTGCAGCAAGCGTTCCAGGCACTGGCCGCCAAGGTCTGGCGGCACCCCATCACCGGCGCCGACGTTC
AGTTCGGCGCGTCTTCCATCGAACGCTGGTATTACCGGGCCCGTCACGTCCAGGATCCGGTCGATCAACTCAAGAACCGA
CTGCGCGACGATTGCGGCCACTTCGTCAGTCTGAGCCCAGCCATCATCGAAGCGCTGGTCGAGCAGTACCGTCAGCACCC
CGGCTGGACCATGCAGTTGCATTACGACAACCTGCGCGTCGCGACCAAGGATGGCCCGGACACGCTGCCGTCCTACACCA
CGGTGTGCCGGTATCTGAAGGCGCAGGGTCTGGTGCGCAAGCCAACCCCGCGCTCGAGCACGGATGGGGCCATCGCTGCT
GCGGCTCGCCGCGAGGCACGCGAGGTGCGTAGCTACGAGGTCGACCACGTGGCCGCGCTCTGGCACCTGGACTTCCACCA
TGGTTCGCGCAAGGTGCTCACCCCCGATGGGCAGTGGCACAAGCCGCTGCTGCTCTGCATTATGGACGACCATTCGCGGC
TGGTCTGCCACCTGCAGTGGTTCCTCGACGAGACCACTGCCTCGCTGGTGCACGGCGTCTCGCAGGCGATCATGAAGCGA
GGGCTGCCGCGGGCCATCATGACCGATAACGGCGCAGCCATGATGGCCGACGAGTTCGTCGAGGGGCTGGCCAGTCTGGG
CATCCTGCACCAGACTACCTTGCCCTACAGCCCATACCAGAATGCCAAGCAGGAACGCTTCTGGGGACAGCTCGAGTCCC
GGCTGATGGCCATGCTCGAAGGTGAGTCGCACCTCACCCTGGAGCAATTGAACCTCGCCACGCAGGCCTGGGTCGAGCAG
GAATACCACCACAAGGAACACGCCGAACTCGAGGCGACGCCTCTGCAGCGCTACCTGTCCTGTGCCGACGTCTCGCGCCC
CAGTCCCGAGGCGCTGGCCTTGCGCCGGGCCTTCCGTATCCGCCAGCATCGCCGCCAGCGCAGAACCGACGGCACCTTCA
CGTTGGACGGCGTGCGCTTCGAGATCCCCGGCGCTTACCGCCACCTCGAGCAAGTCTGCCTGAGCTACGCGCGCTGGGAT
CTCTCCCAAGTCGACCTGATCGATGCGCGCATCGGCGCGATCCTGGCCGCCGTGTTCCCGCTGGACAAGTCTGCCAATGC
CGACGCACGGCGCGCGCATCTCACGGCCAAGGGTGCCTCGCCTGCTAACGAGGAACCCGCGCAGGCTGGCACTGCGCCGC
TGCTGCGTCAGTTGCTCGCCGAACACGCCGCCACCGGCCTGCCGCCGGCCTATCTCCCACCCGCACCCACCAAGCTATGA

Upstream 100 bases:

>100_bases
GAGGGATGCGCCAGATAGGGGAATCTCCCGCAGAACATGTCGATGGCGGGTCACCCGCACTGCCCGTAGCCTGCTCCCGT
TATCCCCCCAACGGAGAGTC

Downstream 100 bases:

>100_bases
ATCAACCCAACCTGCTGGCCTTGTACGGTCTGAAGTTCAACCCCTTCGCCCAGGACATCCCCGTCGAGGCCGTGTTCGTG
CCACCCAAGCTCGATCACTT

Product: transposase Tn6049

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; ISChy3 Transposase; ISChy6 Transposase; Transposase /Integrase Family Protein; Integrase; Insertion Element ISRme2 Protein; Integrase Family Protein

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MSLSIDHRNRWARLRFSVIGPLLASPPAKGELQQAFQALAAKVWRHPITGADVQFGASSIERWYYRARHVQDPVDQLKNR
LRDDCGHFVSLSPAIIEALVEQYRQHPGWTMQLHYDNLRVATKDGPDTLPSYTTVCRYLKAQGLVRKPTPRSSTDGAIAA
AARREAREVRSYEVDHVAALWHLDFHHGSRKVLTPDGQWHKPLLLCIMDDHSRLVCHLQWFLDETTASLVHGVSQAIMKR
GLPRAIMTDNGAAMMADEFVEGLASLGILHQTTLPYSPYQNAKQERFWGQLESRLMAMLEGESHLTLEQLNLATQAWVEQ
EYHHKEHAELEATPLQRYLSCADVSRPSPEALALRRAFRIRQHRRQRRTDGTFTLDGVRFEIPGAYRHLEQVCLSYARWD
LSQVDLIDARIGAILAAVFPLDKSANADARRAHLTAKGASPANEEPAQAGTAPLLRQLLAEHAATGLPPAYLPPAPTKL

Sequences:

>Translated_479_residues
MSLSIDHRNRWARLRFSVIGPLLASPPAKGELQQAFQALAAKVWRHPITGADVQFGASSIERWYYRARHVQDPVDQLKNR
LRDDCGHFVSLSPAIIEALVEQYRQHPGWTMQLHYDNLRVATKDGPDTLPSYTTVCRYLKAQGLVRKPTPRSSTDGAIAA
AARREAREVRSYEVDHVAALWHLDFHHGSRKVLTPDGQWHKPLLLCIMDDHSRLVCHLQWFLDETTASLVHGVSQAIMKR
GLPRAIMTDNGAAMMADEFVEGLASLGILHQTTLPYSPYQNAKQERFWGQLESRLMAMLEGESHLTLEQLNLATQAWVEQ
EYHHKEHAELEATPLQRYLSCADVSRPSPEALALRRAFRIRQHRRQRRTDGTFTLDGVRFEIPGAYRHLEQVCLSYARWD
LSQVDLIDARIGAILAAVFPLDKSANADARRAHLTAKGASPANEEPAQAGTAPLLRQLLAEHAATGLPPAYLPPAPTKL
>Mature_478_residues
SLSIDHRNRWARLRFSVIGPLLASPPAKGELQQAFQALAAKVWRHPITGADVQFGASSIERWYYRARHVQDPVDQLKNRL
RDDCGHFVSLSPAIIEALVEQYRQHPGWTMQLHYDNLRVATKDGPDTLPSYTTVCRYLKAQGLVRKPTPRSSTDGAIAAA
ARREAREVRSYEVDHVAALWHLDFHHGSRKVLTPDGQWHKPLLLCIMDDHSRLVCHLQWFLDETTASLVHGVSQAIMKRG
LPRAIMTDNGAAMMADEFVEGLASLGILHQTTLPYSPYQNAKQERFWGQLESRLMAMLEGESHLTLEQLNLATQAWVEQE
YHHKEHAELEATPLQRYLSCADVSRPSPEALALRRAFRIRQHRRQRRTDGTFTLDGVRFEIPGAYRHLEQVCLSYARWDL
SQVDLIDARIGAILAAVFPLDKSANADARRAHLTAKGASPANEEPAQAGTAPLLRQLLAEHAATGLPPAYLPPAPTKL

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53886; Mature: 53755

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSIDHRNRWARLRFSVIGPLLASPPAKGELQQAFQALAAKVWRHPITGADVQFGASSI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHH
ERWYYRARHVQDPVDQLKNRLRDDCGHFVSLSPAIIEALVEQYRQHPGWTMQLHYDNLRV
HHHHHHHHHHCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHCCCCEEEEEECCEEE
ATKDGPDTLPSYTTVCRYLKAQGLVRKPTPRSSTDGAIAAAARREAREVRSYEVDHVAAL
EECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
WHLDFHHGSRKVLTPDGQWHKPLLLCIMDDHSRLVCHLQWFLDETTASLVHGVSQAIMKR
EEEEECCCCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPRAIMTDNGAAMMADEFVEGLASLGILHQTTLPYSPYQNAKQERFWGQLESRLMAMLE
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GESHLTLEQLNLATQAWVEQEYHHKEHAELEATPLQRYLSCADVSRPSPEALALRRAFRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RQHRRQRRTDGTFTLDGVRFEIPGAYRHLEQVCLSYARWDLSQVDLIDARIGAILAAVFP
HHHHHHHCCCCCEEECCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
LDKSANADARRAHLTAKGASPANEEPAQAGTAPLLRQLLAEHAATGLPPAYLPPAPTKL
CCCCCCCCHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLSIDHRNRWARLRFSVIGPLLASPPAKGELQQAFQALAAKVWRHPITGADVQFGASSI
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHH
ERWYYRARHVQDPVDQLKNRLRDDCGHFVSLSPAIIEALVEQYRQHPGWTMQLHYDNLRV
HHHHHHHHHHCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHCCCCEEEEEECCEEE
ATKDGPDTLPSYTTVCRYLKAQGLVRKPTPRSSTDGAIAAAARREAREVRSYEVDHVAAL
EECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
WHLDFHHGSRKVLTPDGQWHKPLLLCIMDDHSRLVCHLQWFLDETTASLVHGVSQAIMKR
EEEEECCCCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPRAIMTDNGAAMMADEFVEGLASLGILHQTTLPYSPYQNAKQERFWGQLESRLMAMLE
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GESHLTLEQLNLATQAWVEQEYHHKEHAELEATPLQRYLSCADVSRPSPEALALRRAFRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RQHRRQRRTDGTFTLDGVRFEIPGAYRHLEQVCLSYARWDLSQVDLIDARIGAILAAVFP
HHHHHHHCCCCCEEECCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
LDKSANADARRAHLTAKGASPANEEPAQAGTAPLLRQLLAEHAATGLPPAYLPPAPTKL
CCCCCCCCHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA