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The map label for this gene is yebA [H]

Identifier: 94312050

GI number: 94312050

Start: 3380980

End: 3381912

Strand: Reverse

Name: yebA [H]

Synonym: Rmet_3119

Alternate gene names: 94312050

Gene position: 3381912-3380980 (Counterclockwise)

Preceding gene: 94312052

Following gene: 94312049

Centisome position: 86.1

GC content: 66.13

Gene sequence:

>933_bases
ATGCAAATCATCGTGCTACATCCGCGCGAGCAGCGGATGCTTCGTTTCCATCTCACGCGCCTGCGCGTCGCGCTGCTCAT
GCTGGCGCTCTGCTCGCTCGTTGCCGCCGCCGCCTCAGGCGTTATCTGGCTCCTCGCGCGCTCCCAAGCGTCGCCCGAGG
TCTCGCGACAAGCGCGCGAGAATGCCTTTCTACGGCAGAACCTGGCGGTGCTTGCCGCAAGCGTGGGCGATCTGCAGGCG
CAGATGGTCCGTCTCGATGCCCTTGGTGAGCGGGTTTCGGGTCTGGCCGGCATTGCCCCCCAGGATTTCGACTTTCGCCA
TCGCCCAGCCCGTGGGGGCCCGGCCGCGCCGGCGCAGTCGCCCGAACTGACCCTGCCCGAGCTGCGCGCCGAGCTGGCCC
GCCTGGGCGAGCAGGCCGAGCACCGCGTCGACTACTTCGATGTGATCGAGACCGCGTTGATGGACCGTCAGATGAGAGAA
CGACGCATCCCCCGGGTGCTTCCCGTGGCAACCGGGTACGACGGATCCAGCTTCGGTACGCGGATCGATCCTTTCACCGG
TCGCCGCTCCCAGCATGAAGGCGTGGACTTCGTGGCACCCACCGGCACGCCGATCCTGGCGGCCGCAGGTGGCGTGGTGG
TGGCAGCGGAATGGCACAACGAGTACGGCAACATGATTGATATCGATCACGATAACGGACTCAAGACCCGGTATGCTCAC
GCGTCGAAGTCGCTGGTTCGGGCTGGCGATATCGTCCGCCCTGGCCAGATGATTGCCCGGGTCGGCAGCACGGGGCGCTC
GACCGGCGCACACCTGCACTTCGAGGTCCATGTGAACGGTTTGCCACGTAATCCGAATGGCTTTTTGAACGCGGCCGTAC
CGGCGCCCTTGGCCGAGGCGCTCTCCCCAACCAACCGGACCGCCATCCGCTGA

Upstream 100 bases:

>100_bases
TCTAGCGCGCAATCCTTGCCCGTCCGAGAGCCGGGATGCCTTTGCCCGCGTGCGCACGGGGCCGCAAGAGCGGCCCCGTC
TTTTGGGGTGGGGTTAGGTC

Downstream 100 bases:

>100_bases
TCGTCGAACCCTGGGCACGCAGCGGAACATTGAAGTCGGTGAGGTTGTCCCAACCTCACCAGCAGCCTGTCCCGGACGGG
CGGCCCCGGTTATCGCCCGG

Product: putative peptidase M23 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MQIIVLHPREQRMLRFHLTRLRVALLMLALCSLVAAAASGVIWLLARSQASPEVSRQARENAFLRQNLAVLAASVGDLQA
QMVRLDALGERVSGLAGIAPQDFDFRHRPARGGPAAPAQSPELTLPELRAELARLGEQAEHRVDYFDVIETALMDRQMRE
RRIPRVLPVATGYDGSSFGTRIDPFTGRRSQHEGVDFVAPTGTPILAAAGGVVVAAEWHNEYGNMIDIDHDNGLKTRYAH
ASKSLVRAGDIVRPGQMIARVGSTGRSTGAHLHFEVHVNGLPRNPNGFLNAAVPAPLAEALSPTNRTAIR

Sequences:

>Translated_310_residues
MQIIVLHPREQRMLRFHLTRLRVALLMLALCSLVAAAASGVIWLLARSQASPEVSRQARENAFLRQNLAVLAASVGDLQA
QMVRLDALGERVSGLAGIAPQDFDFRHRPARGGPAAPAQSPELTLPELRAELARLGEQAEHRVDYFDVIETALMDRQMRE
RRIPRVLPVATGYDGSSFGTRIDPFTGRRSQHEGVDFVAPTGTPILAAAGGVVVAAEWHNEYGNMIDIDHDNGLKTRYAH
ASKSLVRAGDIVRPGQMIARVGSTGRSTGAHLHFEVHVNGLPRNPNGFLNAAVPAPLAEALSPTNRTAIR
>Mature_310_residues
MQIIVLHPREQRMLRFHLTRLRVALLMLALCSLVAAAASGVIWLLARSQASPEVSRQARENAFLRQNLAVLAASVGDLQA
QMVRLDALGERVSGLAGIAPQDFDFRHRPARGGPAAPAQSPELTLPELRAELARLGEQAEHRVDYFDVIETALMDRQMRE
RRIPRVLPVATGYDGSSFGTRIDPFTGRRSQHEGVDFVAPTGTPILAAAGGVVVAAEWHNEYGNMIDIDHDNGLKTRYAH
ASKSLVRAGDIVRPGQMIARVGSTGRSTGAHLHFEVHVNGLPRNPNGFLNAAVPAPLAEALSPTNRTAIR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=126, Percent_Identity=43.6507936507937, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=38.3928571428571, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=38.3928571428571, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=36.0824742268041, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33691; Mature: 33691

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIIVLHPREQRMLRFHLTRLRVALLMLALCSLVAAAASGVIWLLARSQASPEVSRQARE
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
NAFLRQNLAVLAASVGDLQAQMVRLDALGERVSGLAGIAPQDFDFRHRPARGGPAAPAQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PELTLPELRAELARLGEQAEHRVDYFDVIETALMDRQMRERRIPRVLPVATGYDGSSFGT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
RIDPFTGRRSQHEGVDFVAPTGTPILAAAGGVVVAAEWHNEYGNMIDIDHDNGLKTRYAH
CCCCCCCCCCCCCCCEEECCCCCCCEEECCCEEEEEEECCCCCCEEEEECCCCCCHHHHH
ASKSLVRAGDIVRPGQMIARVGSTGRSTGAHLHFEVHVNGLPRNPNGFLNAAVPAPLAEA
HHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCHHHHH
LSPTNRTAIR
CCCCCCCCCC
>Mature Secondary Structure
MQIIVLHPREQRMLRFHLTRLRVALLMLALCSLVAAAASGVIWLLARSQASPEVSRQARE
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
NAFLRQNLAVLAASVGDLQAQMVRLDALGERVSGLAGIAPQDFDFRHRPARGGPAAPAQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PELTLPELRAELARLGEQAEHRVDYFDVIETALMDRQMRERRIPRVLPVATGYDGSSFGT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
RIDPFTGRRSQHEGVDFVAPTGTPILAAAGGVVVAAEWHNEYGNMIDIDHDNGLKTRYAH
CCCCCCCCCCCCCCCEEECCCCCCCEEECCCEEEEEEECCCCCCEEEEECCCCCCHHHHH
ASKSLVRAGDIVRPGQMIARVGSTGRSTGAHLHFEVHVNGLPRNPNGFLNAAVPAPLAEA
HHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCHHHHH
LSPTNRTAIR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]