Click here to switch to the map view.

The map label for this gene is ypjD [C]

Identifier: 94312024

GI number: 94312024

Start: 3351573

End: 3352511

Strand: Reverse

Name: ypjD [C]

Synonym: Rmet_3093

Alternate gene names: 94312024

Gene position: 3352511-3351573 (Counterclockwise)

Preceding gene: 94312027

Following gene: 94312023

Centisome position: 85.35

GC content: 66.03

Gene sequence:

>939_bases
ATGGCCATTGTACTGTATGCCTTGACGGCACTTCTCTACTGCGGCCTGGCCTTTCATGGCTGGGCGACCCGCAACCCGCG
ACTGGCGGCTGCCGGCGGGGCCACACCTGGCCATCCGGGGCGTCCCGGCGCGGCGGCCACCGCAGTGCTGATGCCGCCCG
CTGCCGGCGGGCGCGCCGAGGGCCAGCCGGCCTGGTGGCACGGGCTGGTGATGGTGGCCCTGGTCAGTCACGGTGTGCTG
CTCCATGAAACGATTTTTCCGGCGGATCGCATGGTGTTCGGGTTCGCCTTCGCGCTGTCGTCGATGCTCTGGCTTGGTGT
GGGCATCTACTGGATCGAGAGCTTCTTCTTCTCGCTGGCCGGCCTGGGCCTGGTCGTTTTCCCGGTGGCAATGCTGGCCA
GCCTGATGCCGCTGGCGTTCCCGGGCACGCTGATCCTGGGGTACGCGGCGCGTCCGCTGTTCAAGCTCCATTTCGTGATC
GCCAACGTGGCGTATGGCCTGTTCACGCTGGCGGCGTTCCATGCGTTCCTGATGCTGATGGCTGAGCGACGCTTGCACGG
CTTCAATCGCCCGGCCGGGACGGAGTCGGCATCGAGCCAGTGGCTCGGACGCTGGCTGGACCTGCTGCCGCCGCTCCTGA
CGCTGGAAAAGCTGCTGTTCAGGCTGATCGCCGCGGGCTTCGTGCTGCTGACGCTAACGATCGCGTCCGGTTTCCTGTTC
TCCGAGCAACTGTTCGCGCGCGCGTTCCGGATCGATCACAAGACCGTCTTCGCGGTCATCTCCTGGCTGATGTTTGGCGG
CATCCTGGTTGGACGCCATTTCCGGGGCTGGCGCGGCCGCACCGCGCTACGCTGGGTGATCGCGTCGTTCGGGATCCTGC
TTCTCGCCTATGTGGGCAGCCGCTTCGTCATGGAAGTGGTGCTGCACCGTATCACCTGA

Upstream 100 bases:

>100_bases
AAGTCGGCTTGAGTGCGGGGCGCAGGTGGTGCCGTGGCAGCATTGTGGCGGGAATCCACCAGCGAATCCACCGGCATTGG
CACTAAGGTAAACTGCGCAA

Downstream 100 bases:

>100_bases
TCCCTTCGCCCCGACATGGCAAGAATCTTCCTACTGCTGGCCATCGTGCTGGGCATCTTGTGGTGGCTGCGCGATCGCGC
CGGCACGCGGCAGACCGCCG

Product: ABC-type transport system involved in cytochrome c biogenesis permease

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAIVLYALTALLYCGLAFHGWATRNPRLAAAGGATPGHPGRPGAAATAVLMPPAAGGRAEGQPAWWHGLVMVALVSHGVL
LHETIFPADRMVFGFAFALSSMLWLGVGIYWIESFFFSLAGLGLVVFPVAMLASLMPLAFPGTLILGYAARPLFKLHFVI
ANVAYGLFTLAAFHAFLMLMAERRLHGFNRPAGTESASSQWLGRWLDLLPPLLTLEKLLFRLIAAGFVLLTLTIASGFLF
SEQLFARAFRIDHKTVFAVISWLMFGGILVGRHFRGWRGRTALRWVIASFGILLLAYVGSRFVMEVVLHRIT

Sequences:

>Translated_312_residues
MAIVLYALTALLYCGLAFHGWATRNPRLAAAGGATPGHPGRPGAAATAVLMPPAAGGRAEGQPAWWHGLVMVALVSHGVL
LHETIFPADRMVFGFAFALSSMLWLGVGIYWIESFFFSLAGLGLVVFPVAMLASLMPLAFPGTLILGYAARPLFKLHFVI
ANVAYGLFTLAAFHAFLMLMAERRLHGFNRPAGTESASSQWLGRWLDLLPPLLTLEKLLFRLIAAGFVLLTLTIASGFLF
SEQLFARAFRIDHKTVFAVISWLMFGGILVGRHFRGWRGRTALRWVIASFGILLLAYVGSRFVMEVVLHRIT
>Mature_311_residues
AIVLYALTALLYCGLAFHGWATRNPRLAAAGGATPGHPGRPGAAATAVLMPPAAGGRAEGQPAWWHGLVMVALVSHGVLL
HETIFPADRMVFGFAFALSSMLWLGVGIYWIESFFFSLAGLGLVVFPVAMLASLMPLAFPGTLILGYAARPLFKLHFVIA
NVAYGLFTLAAFHAFLMLMAERRLHGFNRPAGTESASSQWLGRWLDLLPPLLTLEKLLFRLIAAGFVLLTLTIASGFLFS
EQLFARAFRIDHKTVFAVISWLMFGGILVGRHFRGWRGRTALRWVIASFGILLLAYVGSRFVMEVVLHRIT

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 34082; Mature: 33951

Theoretical pI: Translated: 11.48; Mature: 11.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVLYALTALLYCGLAFHGWATRNPRLAAAGGATPGHPGRPGAAATAVLMPPAAGGRAE
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHEEEEECCCCCCCCC
GQPAWWHGLVMVALVSHGVLLHETIFPADRMVFGFAFALSSMLWLGVGIYWIESFFFSLA
CCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGLVVFPVAMLASLMPLAFPGTLILGYAARPLFKLHFVIANVAYGLFTLAAFHAFLMLM
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERRLHGFNRPAGTESASSQWLGRWLDLLPPLLTLEKLLFRLIAAGFVLLTLTIASGFLF
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEQLFARAFRIDHKTVFAVISWLMFGGILVGRHFRGWRGRTALRWVIASFGILLLAYVGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RFVMEVVLHRIT
HHHHHHHHHHCC
>Mature Secondary Structure 
AIVLYALTALLYCGLAFHGWATRNPRLAAAGGATPGHPGRPGAAATAVLMPPAAGGRAE
CHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHEEEEECCCCCCCCC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HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]