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The map label for this gene is ubiC [H]

Identifier: 94311989

GI number: 94311989

Start: 3315802

End: 3316464

Strand: Reverse

Name: ubiC [H]

Synonym: Rmet_3058

Alternate gene names: 94311989

Gene position: 3316464-3315802 (Counterclockwise)

Preceding gene: 94311990

Following gene: 94311988

Centisome position: 84.43

GC content: 68.93

Gene sequence:

>663_bases
ATGAGTGGCGTAACAGGGATGCAAAAGCTGCGTGCGGCATGGCACGCGCATCTGCCGTATGACGCGTCGATTCCGCTGAA
CCAGCGCCGCTGGATCACTGGTGAAGGCTCACTGACGGCTCGGCTGATGTCGGCGTCCGCCGCCTTCCGCGTGCGGCGAC
TGGCGCAGGCGCCGCAGTTGCCGCTCGCCGACGAATGGCGGGCGCTCGGCCTGATCCGTCCGCTGCCGGCCATCACGCGC
GAAGTGCTGCTGATCTGCGACGAGACGCCAGCCGTATTCGCTCACACGATCGTCGACCCCCGGTATGCGCGGCGCGACTG
GCCGTTCTTGCGCGGGCTCGGCAACCGGCCGCTCGGCGGCGCGCTGTTCGTCGATCCGCGCGTGCGGCGCGACCCATTCC
AGTTTGCACGGCTGACCCCGTGCCACCCGCTGCGTCAGGCGCTGCAGCGGGTATTGCCGGCGCTGTCGTCGGAGCCGATG
TTGCCCGCGCGGCGGTCGGTGTTCCGGCGTGGCGGCGGCGCCATGCTCGTGACGGAGGTCTTCTTGCCGGACCTGCTGAC
ACGGGCAGCGCCTGAGAACACCGGCGCGGGCGGCACCAGACTGCCCCGCCGTATCGACACACATCACACACCATCCAAGC
AGGAAGAGAGACCCGAATCATGA

Upstream 100 bases:

>100_bases
GGGTCATCGAGGGCAGCGATCACGGCATCAGCGAGTTCGAGGAATACGTCGACGACGTACTGGCTTTCTGTGGCTATACC
CCCAACGGAAAGACCGTGGC

Downstream 100 bases:

>100_bases
AATTGCAGGGACGCGTAGCGATCATCACCGGCGCCGCCGCCGGCATCGGTTTTGCCACCGCCGAACGTTTCGCCGCCGAA
GGCGCGAAGCTCATCATGTG

Product: chorismate pyruvate lyase

Products: NA

Alternate protein names: CL; CPL [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSGVTGMQKLRAAWHAHLPYDASIPLNQRRWITGEGSLTARLMSASAAFRVRRLAQAPQLPLADEWRALGLIRPLPAITR
EVLLICDETPAVFAHTIVDPRYARRDWPFLRGLGNRPLGGALFVDPRVRRDPFQFARLTPCHPLRQALQRVLPALSSEPM
LPARRSVFRRGGGAMLVTEVFLPDLLTRAAPENTGAGGTRLPRRIDTHHTPSKQEERPES

Sequences:

>Translated_220_residues
MSGVTGMQKLRAAWHAHLPYDASIPLNQRRWITGEGSLTARLMSASAAFRVRRLAQAPQLPLADEWRALGLIRPLPAITR
EVLLICDETPAVFAHTIVDPRYARRDWPFLRGLGNRPLGGALFVDPRVRRDPFQFARLTPCHPLRQALQRVLPALSSEPM
LPARRSVFRRGGGAMLVTEVFLPDLLTRAAPENTGAGGTRLPRRIDTHHTPSKQEERPES
>Mature_219_residues
SGVTGMQKLRAAWHAHLPYDASIPLNQRRWITGEGSLTARLMSASAAFRVRRLAQAPQLPLADEWRALGLIRPLPAITRE
VLLICDETPAVFAHTIVDPRYARRDWPFLRGLGNRPLGGALFVDPRVRRDPFQFARLTPCHPLRQALQRVLPALSSEPML
PARRSVFRRGGGAMLVTEVFLPDLLTRAAPENTGAGGTRLPRRIDTHHTPSKQEERPES

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway [H]

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007440 [H]

Pfam domain/function: PF04345 Chor_lyase [H]

EC number: =4.1.3.40 [H]

Molecular weight: Translated: 24594; Mature: 24463

Theoretical pI: Translated: 11.91; Mature: 11.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVTGMQKLRAAWHAHLPYDASIPLNQRRWITGEGSLTARLMSASAAFRVRRLAQAPQL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
PLADEWRALGLIRPLPAITREVLLICDETPAVFAHTIVDPRYARRDWPFLRGLGNRPLGG
CCHHHHHHHHHHCCCHHHHHHHEEEECCCCHHHHHHHCCCHHHHCCCHHHHCCCCCCCCC
ALFVDPRVRRDPFQFARLTPCHPLRQALQRVLPALSSEPMLPARRSVFRRGGGAMLVTEV
EEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEHHHH
FLPDLLTRAAPENTGAGGTRLPRRIDTHHTPSKQEERPES
HHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGVTGMQKLRAAWHAHLPYDASIPLNQRRWITGEGSLTARLMSASAAFRVRRLAQAPQL
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
PLADEWRALGLIRPLPAITREVLLICDETPAVFAHTIVDPRYARRDWPFLRGLGNRPLGG
CCHHHHHHHHHHCCCHHHHHHHEEEECCCCHHHHHHHCCCHHHHCCCHHHHCCCCCCCCC
ALFVDPRVRRDPFQFARLTPCHPLRQALQRVLPALSSEPMLPARRSVFRRGGGAMLVTEV
EEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEHHHH
FLPDLLTRAAPENTGAGGTRLPRRIDTHHTPSKQEERPES
HHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA