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The map label for this gene is pyrF [H]

Identifier: 94311981

GI number: 94311981

Start: 3306541

End: 3307359

Strand: Reverse

Name: pyrF [H]

Synonym: Rmet_3050

Alternate gene names: 94311981

Gene position: 3307359-3306541 (Counterclockwise)

Preceding gene: 94311984

Following gene: 335055643

Centisome position: 84.2

GC content: 64.59

Gene sequence:

>819_bases
ATGACTTTTACCGAGCAGCTGTCCGCCGCGTGGCAGCGTAACGATTCCCTGCTGTGCGTCGGGCTTGATCCCGACCCGGC
CAAGCTGCCGCTGTCCATGACCGGTACCGGCGGCGCGATTTTCTCGTTCTGCCGCGAAATCGTCGATGCCACGGCCGACC
TGGTCTGCGCGTTCAAGCCGCAGATCGCCTATTTCCACTCGCAGCGCGCCGAAGACCAGCTCGAACAGTTGGTCGAGTAC
ATCCATGACGCGCACCCCGGCGTCCCCGTGATCCTCGATGCGAAGCGCGGCGATATCGGCTCCACGGCGGAGCACTATGC
AATCGAGGCCTTCGAGCGCTACAAGGCCGATGCCGTGACCGTCAGCCCGTACATGGGCTTCGATTCGATGTCGCCGTATC
TGGCGTATCCGGGCAAGGGCGTGATCGTGCTGTGCCGCACGTCGAATCCCGGTGGGTCTGACGTGCAGTTCCTGCAGGTC
GACGGCAAGCCGCTGTACCAGGTGGTGGCCGAAGCCGCACGCGAACGCTGGAATACCAACGGGCAGATGGGTCTGGTGGT
GGGCGCGACGTTCCCGAACGAGATCGCCAAGGTCCGGCAGATCGTCGGCGACATGCCACTGCTGATTCCGGGCATCGGCG
CCCAGGGCGGCGACATCGAGGCTACGGTCAAGGCCGGCCGTACGGCCGACGGCACGGGCATGATGATCAATTCGTCGCGG
GCCATCCTGTACGCCAGCCGCGAGAAGGACTTTGCGCTGGCTGCGCGAAACGTGGCGTTGCAGACGCGCGAGACGATCAA
CCGCTATCGTCACGGCTGA

Upstream 100 bases:

>100_bases
GGTGCCGTTGCAGCCAACCGGTCGGCACCTGCCCGCGTTATGCTGTGTAGACACTGGTTCACAGCCGGGCCGCCGGCTTC
ACCCGAATTCCGAGCATCCC

Downstream 100 bases:

>100_bases
TCCGCGTGAACGGTTTTCCCTTTCCCAGTCGTGGGAGAGGGGGGCAGATTCAGGCTTCGTTGCGAATCAGTTCCAGCAGA
CCGCGCATCGCGTGTTCGGC

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTFTEQLSAAWQRNDSLLCVGLDPDPAKLPLSMTGTGGAIFSFCREIVDATADLVCAFKPQIAYFHSQRAEDQLEQLVEY
IHDAHPGVPVILDAKRGDIGSTAEHYAIEAFERYKADAVTVSPYMGFDSMSPYLAYPGKGVIVLCRTSNPGGSDVQFLQV
DGKPLYQVVAEAARERWNTNGQMGLVVGATFPNEIAKVRQIVGDMPLLIPGIGAQGGDIEATVKAGRTADGTGMMINSSR
AILYASREKDFALAARNVALQTRETINRYRHG

Sequences:

>Translated_272_residues
MTFTEQLSAAWQRNDSLLCVGLDPDPAKLPLSMTGTGGAIFSFCREIVDATADLVCAFKPQIAYFHSQRAEDQLEQLVEY
IHDAHPGVPVILDAKRGDIGSTAEHYAIEAFERYKADAVTVSPYMGFDSMSPYLAYPGKGVIVLCRTSNPGGSDVQFLQV
DGKPLYQVVAEAARERWNTNGQMGLVVGATFPNEIAKVRQIVGDMPLLIPGIGAQGGDIEATVKAGRTADGTGMMINSSR
AILYASREKDFALAARNVALQTRETINRYRHG
>Mature_271_residues
TFTEQLSAAWQRNDSLLCVGLDPDPAKLPLSMTGTGGAIFSFCREIVDATADLVCAFKPQIAYFHSQRAEDQLEQLVEYI
HDAHPGVPVILDAKRGDIGSTAEHYAIEAFERYKADAVTVSPYMGFDSMSPYLAYPGKGVIVLCRTSNPGGSDVQFLQVD
GKPLYQVVAEAARERWNTNGQMGLVVGATFPNEIAKVRQIVGDMPLLIPGIGAQGGDIEATVKAGRTADGTGMMINSSRA
ILYASREKDFALAARNVALQTRETINRYRHG

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR018089
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 29490; Mature: 29359

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTEQLSAAWQRNDSLLCVGLDPDPAKLPLSMTGTGGAIFSFCREIVDATADLVCAFKP
CCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEECCC
QIAYFHSQRAEDQLEQLVEYIHDAHPGVPVILDAKRGDIGSTAEHYAIEAFERYKADAVT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE
VSPYMGFDSMSPYLAYPGKGVIVLCRTSNPGGSDVQFLQVDGKPLYQVVAEAARERWNTN
ECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
GQMGLVVGATFPNEIAKVRQIVGDMPLLIPGIGAQGGDIEATVKAGRTADGTGMMINSSR
CCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCC
AILYASREKDFALAARNVALQTRETINRYRHG
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFTEQLSAAWQRNDSLLCVGLDPDPAKLPLSMTGTGGAIFSFCREIVDATADLVCAFKP
CHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEECCC
QIAYFHSQRAEDQLEQLVEYIHDAHPGVPVILDAKRGDIGSTAEHYAIEAFERYKADAVT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE
VSPYMGFDSMSPYLAYPGKGVIVLCRTSNPGGSDVQFLQVDGKPLYQVVAEAARERWNTN
ECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
GQMGLVVGATFPNEIAKVRQIVGDMPLLIPGIGAQGGDIEATVKAGRTADGTGMMINSSR
CCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCC
AILYASREKDFALAARNVALQTRETINRYRHG
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA