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The map label for this gene is int [H]

Identifier: 94311976

GI number: 94311976

Start: 3300274

End: 3301521

Strand: Reverse

Name: int [H]

Synonym: Rmet_3045

Alternate gene names: 94311976

Gene position: 3301521-3300274 (Counterclockwise)

Preceding gene: 335055643

Following gene: 94311975

Centisome position: 84.05

GC content: 66.51

Gene sequence:

>1248_bases
ATGGCCCCTACATGGCTCTTGGGAATCGGGTCTTTCCGAGGAGTCATCGTGGCAAAACTCAAGCTCACCAAGTCCGCAGT
CGATGCGGCACAACCCCAGGCGCAGGCCGTCGAACTCCGGGACACGCTGGTGCCCGGCTTCCTGTGCAAGGTTACACCAG
CGGGCCGCAAGGTGTTCATGCTCCAGTACCGCACGAACGCTGGCGAGCGGCGCAAGCCCGCCCTGGGCCTGTACGGGGAA
CTGACCGTCGAGCAGGCCCGCTCGCTGGCCCAGGAATGGCTGGCCGAGGTGCGCCGGGGCGGCGACCCCAGCGCGGCCAA
GGCCGCCGCCCGTTCAGCCCCCACGGTCAAGGAGCTGTGTACCAAGTTCATGGAGGATTACTCCAAGCAGCGCAACAAGC
CCAGCACCCAGCGCGGGTATCAGGCCGTCATCGACCGCTGCATCGTTCCGATGCTGGGCCGTTTGAAGGTCCAGGACGTG
AAGCGCCCGGACGTGGCCACGGCGATGAAGAAGATGGCGCACAAGCCGGCCGAGGCCAACCGTGCTTTCAGCGTGATGCG
CAAGATGTTCAACCTGGCCGAGGTGTGGGGCCACCGGCCTGACGGCACCAACCCCTGCCGCCACGTCCCGATGTACCCCA
ACGGCAAGGCCACCCACCTCATCAGCGACGAGGACATGGGCAAGCTGTTTCGGCGACTGGAGCACATCGAAGCCGAGGGT
CTGGAGAACTACGTCATCCCGCTGGCGATCCGCCTTCAATTCGAGTTCGCCGGCCGCCGCTCCGAAATCGTGACGCTCCG
ATGGGATTGGGTGGACCTGGACAACCGCCGCGTGGTCTGGCCGGACAGCAAGACGGGCGGCATGTCCAAGCCCATGAGCG
AGGAAGCCTATCGACTGCTCTCGACGGCGCCACGGCAGGAAGGCACTCCCTATGTGCTGCCGTCTCCAAGCCATCCCGGC
AAGCACCTGACCACGGGCGAGTATTACGGCGGCTGGAGCCGCGCCCTCAAGGCGGCGGGCGCCACGCACGTCGGCACGCA
TGGCATCCGCCACCGCTCCGCGACCGACATTGCCAACTCGGGCATCCCGGTCAAGGTCGGCATGGCGCTGACGGCGCACA
AGACCGTGGCGATGTTCATGCGCTACGTCCACACCGAGGACGATCCGGTGCGCAAGGCGGCCGAGCTGGTGGCGAACCGG
CGCAAGACGATCACCGAGGCGCAGCGGCCTGCGGAGGTGGCTGCATGA

Upstream 100 bases:

>100_bases
GCTGGACTACGCCGAAGCCCGATACAGCAGGTTTATCAATAACTTAGGCGAGTCCAACATATGCCGGTGCTTTCCGAAAC
CTGACCCGGCTTCCCCTCTG

Downstream 100 bases:

>100_bases
CCAAGAAGGCGCCTGCGATGGCGGGAGTCGCACCCGCCGCCGTGCCTGCCGGCTACGCCGGCATCCACGGCGGCATCGTG
GATCTGCTCGATGCCGCGCG

Product: tyrosine-based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MAPTWLLGIGSFRGVIVAKLKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGE
LTVEQARSLAQEWLAEVRRGGDPSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDV
KRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEG
LENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPG
KHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANR
RKTITEAQRPAEVAA

Sequences:

>Translated_415_residues
MAPTWLLGIGSFRGVIVAKLKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGE
LTVEQARSLAQEWLAEVRRGGDPSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDV
KRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEG
LENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPG
KHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANR
RKTITEAQRPAEVAA
>Mature_414_residues
APTWLLGIGSFRGVIVAKLKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGEL
TVEQARSLAQEWLAEVRRGGDPSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVK
RPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEGL
ENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGK
HLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRR
KTITEAQRPAEVAA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=359, Percent_Identity=25.9052924791086, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46113; Mature: 45982

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTWLLGIGSFRGVIVAKLKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFM
CCCCEEEECCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCEEEE
LQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGDPSAAKAAARSAPTVKELC
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
TKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKRPDVATAMKKMAHKPAEAN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHH
RAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
LENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSKTGGMSKPMSEEAYRLL
CCCEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHH
STAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANS
HCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHCCCCCCCCCHHHHHCC
GIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRKTITEAQRPAEVAA
CCCEEECEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
APTWLLGIGSFRGVIVAKLKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFM
CCCEEEECCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCEEEE
LQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGDPSAAKAAARSAPTVKELC
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
TKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKRPDVATAMKKMAHKPAEAN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHH
RAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
LENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSKTGGMSKPMSEEAYRLL
CCCEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHH
STAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANS
HCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHCCCCCCCCCHHHHHCC
GIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRKTITEAQRPAEVAA
CCCEEECEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]