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The map label for this gene is yupB [H]

Identifier: 94311966

GI number: 94311966

Start: 3289473

End: 3290300

Strand: Reverse

Name: yupB [H]

Synonym: Rmet_3034

Alternate gene names: 94311966

Gene position: 3290300-3289473 (Counterclockwise)

Preceding gene: 94311968

Following gene: 94311965

Centisome position: 83.76

GC content: 65.34

Gene sequence:

>828_bases
ATGCAACTCGCATCCCGCTTCGCTTCCCATTCCCCCGCATTGCGCAGCGACTCCCCGCTGTCCGATGACCAGATCCGCCG
CGTGGCCCCGTCCATCTTCGCGGATGCCCCCCATGAAAGCCGTTCCGAGCGGTACAGCTACATCCCCACCGCCGCCGTGC
TGACCGAGCTTCGCAAAGAGGGGTTTCAGCCCTTCATGGTGTGCCAGACCCGCGTTCGCAACGAGGGCCGGCGCGAGCAC
ACGAAACACATGCTGCGCCTGCGCCACGCCAACCAGATCAACGCCCGCGAAGCCAATGAAATCATCCTGCTGAACTCGCA
CGACGGCACGAGCAGCTATCAATTACTGGGTGGCATGTTCCGCTTCGTTTGCAGCAATGGCCTTGTCTGCGGCGACACCG
TGGGCGATGTGCGCGTGCCCCACAAGGGCGACGTGGCGGGCCATGTCATCGAGGGCGCCTATCAGGTGCTGAGCGGCTTC
GAGCATGCGCAGGAATCGCGCGAATCCATGCAGGCCATCACGCTGGATGCCGGGGAATCGGAAGTGTTCGCCCGCGCCGC
GCTGGCCCTCAAGTACGACGACCCAACCAAGCCCGCGCCCGTCACGGAATCGCAAATCCTGATGCCGCGCCGCTTCGACG
ACCGCCGCCCCGACCTGTGGAGCGTGTTCAACCGCACGCAGGAGAACCTGACCAAGGGCGGATTGCATGGCCGCGCCGCC
AATGGCCGCAGACAGCAGACCCGCCCCGTGCAGGGCATTGATTCGGACATTCGCCTGAACCGCGCCCTGTGGCTGCTGGC
CGATGGCATGCGCGCCCTCAAGGCCTGA

Upstream 100 bases:

>100_bases
CCTCGCGCCGACCGCACCGAACAGCCGAAAGGCTGGGCTTCGAATCTTGGAATCCGGTGTGCGGTTTTCTTCAACAGCCT
TTTTGTTCAGGAGAAAGACC

Downstream 100 bases:

>100_bases
CCCCCTCTGACGTGTTCCCCGCCGGAGGGGCGGTTTCCCCTCCATTCCCTTGTTTCACTTGATTGGAGATTCACCATGAA
CGCCGTTACTTACACCGAAG

Product: F plasmid protein 32-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MQLASRFASHSPALRSDSPLSDDQIRRVAPSIFADAPHESRSERYSYIPTAAVLTELRKEGFQPFMVCQTRVRNEGRREH
TKHMLRLRHANQINAREANEIILLNSHDGTSSYQLLGGMFRFVCSNGLVCGDTVGDVRVPHKGDVAGHVIEGAYQVLSGF
EHAQESRESMQAITLDAGESEVFARAALALKYDDPTKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLHGRAA
NGRRQQTRPVQGIDSDIRLNRALWLLADGMRALKA

Sequences:

>Translated_275_residues
MQLASRFASHSPALRSDSPLSDDQIRRVAPSIFADAPHESRSERYSYIPTAAVLTELRKEGFQPFMVCQTRVRNEGRREH
TKHMLRLRHANQINAREANEIILLNSHDGTSSYQLLGGMFRFVCSNGLVCGDTVGDVRVPHKGDVAGHVIEGAYQVLSGF
EHAQESRESMQAITLDAGESEVFARAALALKYDDPTKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLHGRAA
NGRRQQTRPVQGIDSDIRLNRALWLLADGMRALKA
>Mature_275_residues
MQLASRFASHSPALRSDSPLSDDQIRRVAPSIFADAPHESRSERYSYIPTAAVLTELRKEGFQPFMVCQTRVRNEGRREH
TKHMLRLRHANQINAREANEIILLNSHDGTSSYQLLGGMFRFVCSNGLVCGDTVGDVRVPHKGDVAGHVIEGAYQVLSGF
EHAQESRESMQAITLDAGESEVFARAALALKYDDPTKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLHGRAA
NGRRQQTRPVQGIDSDIRLNRALWLLADGMRALKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0380 family [H]

Homologues:

Organism=Escherichia coli, GI1788987, Length=269, Percent_Identity=57.2490706319703, Blast_Score=323, Evalue=1e-89,
Organism=Escherichia coli, GI87081705, Length=269, Percent_Identity=56.8773234200744, Blast_Score=313, Evalue=9e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009276 [H]

Pfam domain/function: PF06067 DUF932 [H]

EC number: NA

Molecular weight: Translated: 30785; Mature: 30785

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLASRFASHSPALRSDSPLSDDQIRRVAPSIFADAPHESRSERYSYIPTAAVLTELRKE
CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHC
GFQPFMVCQTRVRNEGRREHTKHMLRLRHANQINAREANEIILLNSHDGTSSYQLLGGMF
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
RFVCSNGLVCGDTVGDVRVPHKGDVAGHVIEGAYQVLSGFEHAQESRESMQAITLDAGES
HHHHCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCH
EVFARAALALKYDDPTKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLHGRAA
HHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
NGRRQQTRPVQGIDSDIRLNRALWLLADGMRALKA
CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQLASRFASHSPALRSDSPLSDDQIRRVAPSIFADAPHESRSERYSYIPTAAVLTELRKE
CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHC
GFQPFMVCQTRVRNEGRREHTKHMLRLRHANQINAREANEIILLNSHDGTSSYQLLGGMF
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
RFVCSNGLVCGDTVGDVRVPHKGDVAGHVIEGAYQVLSGFEHAQESRESMQAITLDAGES
HHHHCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCH
EVFARAALALKYDDPTKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLHGRAA
HHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
NGRRQQTRPVQGIDSDIRLNRALWLLADGMRALKA
CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2693941; 2315017 [H]