Click here to switch to the map view.

The map label for this gene is repA

Identifier: 94311956

GI number: 94311956

Start: 3281707

End: 3282564

Strand: Reverse

Name: repA

Synonym: Rmet_3024

Alternate gene names: NA

Gene position: 3282564-3281707 (Counterclockwise)

Preceding gene: 94311957

Following gene: 94311955

Centisome position: 83.57

GC content: 67.25

Gene sequence:

>858_bases
ATGTCCAGCCCCGCGCTGCCCATGCGGCAGCGACCGATGCAAGAGCGCGAACAGCTCGATCTGTTCCGCGCCTTGCCGGG
CGACATGGCGCCGCGCGACAGCCAGGACTTGATGGCCTTTCCGTTCTTCTCGCTGGCGAAGTCGCGGCGCACGGCGCCGA
TCGACTTCCGCGCCAGCGGCATCACGATCCGCGTGGAGGGCACGCAGGAGCATGGCATCGCCACGATTTGGGATGCGGAC
ATCCTGATCTGGGCTGCAAGCCAGATTGTGGAAGCCCGCGATGCGGGCTTGCGCCCGTCGCGGCTGATGCAGGCCACGCC
CTACGAGATCCTGCGCTTCATCGGGCGCGGTACGTCGCTGCGCGACTACCAGCGCCTCAAGGCGGCCTTGGATCGGCTGC
AGTCCACGACCGTGGCCACGTCGATCCGCGAGACGACCGGGCGGCGCCTGCATCGCTTCTCATGGATCAACGAGTGGAAG
GAACTGGCCGATGCCAAGGGCACCCCCTTGGGGCTGGAACTGATCCTGCCGGACTGGTTCTATGCGGGCGTGCTCGATGC
TGCCCTCGTGTTGACCATCGACCCGGCGTATTTCCGGCTGACGGGCGGGATCGAGCGATGGCTGTACCGCCTGGTGCGCA
AGCACGGCGGGCGACAGCCTGGCGGCTGGCAGTTCGACTTCCAGCACCTGTACCGCAAGTCGGGCAGCGTGGCGCGGTAC
TACGACTTCGCCGCCGACCTGCGCGCACTGGTGGTGCGGCAAGCCTTGCCTGGCTACCAGTTGGGCATCGAGTACGTCTC
GGGCATTGCCTCGCCGCTGCTGACGTTCCGGCCCGTGCCGTCCACGGCACGGGGATAA

Upstream 100 bases:

>100_bases
CCGAGCGCAGCTTCGAGAGCACGTCCGAGCCCGAGTACGCCGAGCAGCATTCGGCGGACAGCCGTGCGCGCTGATCGCTG
GCGCGCGGGTGGCCTTCGCC

Downstream 100 bases:

>100_bases
CTGCTGCGCAGCCTGTGGACGGACTCGTGCTATCAGGCAACAGAGGTATCGTGCTATCAGGCAACGAATCCTCGTGCTAT
CAGGCAACAAAACCGGCCGC

Product: replication initiator and transcription repressor protein RepA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSSPALPMRQRPMQEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRASGITIRVEGTQEHGIATIWDAD
ILIWAASQIVEARDAGLRPSRLMQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWK
ELADAKGTPLGLELILPDWFYAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFDFQHLYRKSGSVARY
YDFAADLRALVVRQALPGYQLGIEYVSGIASPLLTFRPVPSTARG

Sequences:

>Translated_285_residues
MSSPALPMRQRPMQEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRASGITIRVEGTQEHGIATIWDAD
ILIWAASQIVEARDAGLRPSRLMQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWK
ELADAKGTPLGLELILPDWFYAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFDFQHLYRKSGSVARY
YDFAADLRALVVRQALPGYQLGIEYVSGIASPLLTFRPVPSTARG
>Mature_284_residues
SSPALPMRQRPMQEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRASGITIRVEGTQEHGIATIWDADI
LIWAASQIVEARDAGLRPSRLMQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWKE
LADAKGTPLGLELILPDWFYAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFDFQHLYRKSGSVARYY
DFAADLRALVVRQALPGYQLGIEYVSGIASPLLTFRPVPSTARG

Specific function: Unknown

COG id: COG5534

COG function: function code L; Plasmid replication initiator protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BRCT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001357
- InterPro:   IPR018777 [H]

Pfam domain/function: PF10134 RPA [H]

EC number: NA

Molecular weight: Translated: 32268; Mature: 32137

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPALPMRQRPMQEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRASG
CCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC
ITIRVEGTQEHGIATIWDADILIWAASQIVEARDAGLRPSRLMQATPYEILRFIGRGTSL
EEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCH
RDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWKELADAKGTPLGLELILPDWF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
YAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFDFQHLYRKSGSVARY
HHHHHHHHHHEEECCHHHEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHH
YDFAADLRALVVRQALPGYQLGIEYVSGIASPLLTFRPVPSTARG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure 
SSPALPMRQRPMQEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRASG
CCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC
ITIRVEGTQEHGIATIWDADILIWAASQIVEARDAGLRPSRLMQATPYEILRFIGRGTSL
EEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCH
RDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWKELADAKGTPLGLELILPDWF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
YAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFDFQHLYRKSGSVARY
HHHHHHHHHHEEECCHHHEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHH
YDFAADLRALVVRQALPGYQLGIEYVSGIASPLLTFRPVPSTARG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12219091 [H]