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The map label for this gene is hda [C]

Identifier: 94311844

GI number: 94311844

Start: 3166623

End: 3167330

Strand: Direct

Name: hda [C]

Synonym: Rmet_2912

Alternate gene names: 94311844

Gene position: 3166623-3167330 (Clockwise)

Preceding gene: 94311842

Following gene: 94311845

Centisome position: 80.61

GC content: 65.54

Gene sequence:

>708_bases
ATGTCACCGCGTCAAAAGCAGCTCTCGCTCGAACTGGGCAGCCCGCCGCCGTCCACATTCGAGAATTTCTTCGTGGCCGC
CAATCGCGAGTCCGTGCAGCGCCTGCGCGAACTGCCTGGCCTTGTCGCGCGCGAGCAGGCCACGGACCGCCTGATCTACC
TGTGGGGCGAGATCGGCTCCGGCCGCACGCACCTGCTGCATGCCGTATGCGACGCCGCGCTGCACACCGGCCTGAATTGC
CGGTACCTGAGCCCGCACCACGCCCTGTCCGACTTCATGTTCGATCCGTCGTGCCAGATTTATACGGTCGACGACGTCGA
ATTGCTCGACGAAGCCCGCCAGATCGCGGTGTTCTCACTGTACAACGAGGTCCGCGCCCATGTGCGGTGCGCGCTCGTGG
TGGCCGGGGGCCTGGCGCCGCGGGCCATGCCGGTACGTGAAGATTTGCGCACCCGGCTCGGCTGGGGCCTGGTATACCAG
GTGGAATCGCTCTCGGACGAGGACAAGATGGCCGCGCTCCTGCAAGCCGCACGCGAGCGTGGCCTGCAGTTGTCGCCCGA
AATCCCGCACTGGCTCGTCACACGCCATTACCGTGACATGCCCAGCCTGATGGCGCTGCTGGACGCACTCGACACCTACT
CACTCGAACGCAAACGCGCGGTGACGCTGCCGCTGCTGCGGGAAATGTTCGCCGAATTCCGGGAGTAA

Upstream 100 bases:

>100_bases
GTCCAGTAAAATCGCAATTTTAACGGATACAGGCTCCCGGCGACCAGCTATCGCGGTCACTCTCCGTCAGCCGCAGAATC
GGGCAAGTAACGCATTCGTC

Downstream 100 bases:

>100_bases
CCGACGCCCCGCCGGCCTGACTGGCACGAAATCCGCCCGGTCCGGGCTCAGGACACCGCCGGGCTGGCAAGGCCGGCTCC
CGGCCCCGACTGCCTGTTGC

Product: DnaA regulatory inactivator Hda

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSPRQKQLSLELGSPPPSTFENFFVAANRESVQRLRELPGLVAREQATDRLIYLWGEIGSGRTHLLHAVCDAALHTGLNC
RYLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSLYNEVRAHVRCALVVAGGLAPRAMPVREDLRTRLGWGLVYQ
VESLSDEDKMAALLQAARERGLQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE

Sequences:

>Translated_235_residues
MSPRQKQLSLELGSPPPSTFENFFVAANRESVQRLRELPGLVAREQATDRLIYLWGEIGSGRTHLLHAVCDAALHTGLNC
RYLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSLYNEVRAHVRCALVVAGGLAPRAMPVREDLRTRLGWGLVYQ
VESLSDEDKMAALLQAARERGLQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE
>Mature_234_residues
SPRQKQLSLELGSPPPSTFENFFVAANRESVQRLRELPGLVAREQATDRLIYLWGEIGSGRTHLLHAVCDAALHTGLNCR
YLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSLYNEVRAHVRCALVVAGGLAPRAMPVREDLRTRLGWGLVYQV
ESLSDEDKMAALLQAARERGLQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE

Specific function: Unknown

COG id: COG0593

COG function: function code L; ATPase involved in DNA replication initiation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dnaA family. HdA subfamily [H]

Homologues:

Organism=Escherichia coli, GI226510964, Length=234, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020591
- InterPro:   IPR017788
- InterPro:   IPR013317 [H]

Pfam domain/function: PF00308 Bac_DnaA [H]

EC number: NA

Molecular weight: Translated: 26698; Mature: 26567

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRQKQLSLELGSPPPSTFENFFVAANRESVQRLRELPGLVAREQATDRLIYLWGEIGS
CCCCCCEEEEECCCCCCHHHHHHEEECCHHHHHHHHHCCCHHHHHHHCCEEEEEEECCCC
GRTHLLHAVCDAALHTGLNCRYLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSL
CHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHH
YNEVRAHVRCALVVAGGLAPRAMPVREDLRTRLGWGLVYQVESLSDEDKMAALLQAARER
HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
GLQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPRQKQLSLELGSPPPSTFENFFVAANRESVQRLRELPGLVAREQATDRLIYLWGEIGS
CCCCCEEEEECCCCCCHHHHHHEEECCHHHHHHHHHCCCHHHHHHHCCEEEEEEECCCC
GRTHLLHAVCDAALHTGLNCRYLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSL
CHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHH
YNEVRAHVRCALVVAGGLAPRAMPVREDLRTRLGWGLVYQVESLSDEDKMAALLQAARER
HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
GLQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]