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The map label for this gene is dedA [H]

Identifier: 94311839

GI number: 94311839

Start: 3161035

End: 3161694

Strand: Reverse

Name: dedA [H]

Synonym: Rmet_2907

Alternate gene names: 94311839

Gene position: 3161694-3161035 (Counterclockwise)

Preceding gene: 94311843

Following gene: 94311836

Centisome position: 80.49

GC content: 61.21

Gene sequence:

>660_bases
TTGGATACCGCATTGCAACTGCTCGACATGGTTCTCCATGTCGACAAATTCCTCGGACAGTTCGTCCAGGACTATGGCGT
CTGGGTCTACGGCATCCTGTTTGCGATCGTCTTTGCCGAGACGGGGCTGGTGGTGCTGCCCTTCCTGCCGGGTGACTCGC
TGCTGTTCATTGCCGGCGCGATGTGCGCGACGGGCGCGATGAACGAATGGGTGCTGGCGGGGCTGCTGCTGTTGGCGGCG
GTGACCGGCAATACGGTCAACTACATGGTCGGTAGCTGGATCGGGCCGAAGGTATTCGATCACCAGTGGCGATTCCTGGA
CCAGAAGGCGCTGCTCAAGACGCACATGTTCTACGAGAAGCATGGCGGCAAGACGCTGGTGATGGCACGTTTCATCCCGA
TCGTGCGCACGTTCGCGCCGTTCGTGGCCGGCGTGTCGCAGATGACGTTCGCGCGATTCCAGCTGTTCAATGTGATCGGC
GCGGTGATCTGGGTGTTCGGCCTGGTATTCGCCGGCTACTTCTTCGGCAACCTGCCGTTCATCAAGCAATACCTGAACCT
GATCGTGCTGGCTGGTATCGGCGCGGCCGTGGTGCCACTGGTGCTCGGCGGGTTGTGGAAGTTGGTGCGCGGCAAGGCGC
GCGATACGCGCGCTTCCTGA

Upstream 100 bases:

>100_bases
ACACGAATTCGGCACAGTCCGGGCACTTTTCCGGGCGCCAGGTGACGGATCAAACCGGGCGCTCTTGTATGATGTGGACC
TTCATTGAATGGGGACAAAT

Downstream 100 bases:

>100_bases
GCGCAGCAGGGCCGGATGGGCCAGCAGCCGTTAGTTGAGGCTGCGGCTCATCATCCGCAAGGCTGGCATCCGATCGCGAA
TCTGCGTGGAGTCGGCCGCA

Product: DedA family protein transmembrane protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDTALQLLDMVLHVDKFLGQFVQDYGVWVYGILFAIVFAETGLVVLPFLPGDSLLFIAGAMCATGAMNEWVLAGLLLLAA
VTGNTVNYMVGSWIGPKVFDHQWRFLDQKALLKTHMFYEKHGGKTLVMARFIPIVRTFAPFVAGVSQMTFARFQLFNVIG
AVIWVFGLVFAGYFFGNLPFIKQYLNLIVLAGIGAAVVPLVLGGLWKLVRGKARDTRAS

Sequences:

>Translated_219_residues
MDTALQLLDMVLHVDKFLGQFVQDYGVWVYGILFAIVFAETGLVVLPFLPGDSLLFIAGAMCATGAMNEWVLAGLLLLAA
VTGNTVNYMVGSWIGPKVFDHQWRFLDQKALLKTHMFYEKHGGKTLVMARFIPIVRTFAPFVAGVSQMTFARFQLFNVIG
AVIWVFGLVFAGYFFGNLPFIKQYLNLIVLAGIGAAVVPLVLGGLWKLVRGKARDTRAS
>Mature_219_residues
MDTALQLLDMVLHVDKFLGQFVQDYGVWVYGILFAIVFAETGLVVLPFLPGDSLLFIAGAMCATGAMNEWVLAGLLLLAA
VTGNTVNYMVGSWIGPKVFDHQWRFLDQKALLKTHMFYEKHGGKTLVMARFIPIVRTFAPFVAGVSQMTFARFQLFNVIG
AVIWVFGLVFAGYFFGNLPFIKQYLNLIVLAGIGAAVVPLVLGGLWKLVRGKARDTRAS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=213, Percent_Identity=48.3568075117371, Blast_Score=210, Evalue=7e-56,
Organism=Escherichia coli, GI1789481, Length=157, Percent_Identity=39.4904458598726, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789384, Length=157, Percent_Identity=36.3057324840764, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24156; Mature: 24156

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTALQLLDMVLHVDKFLGQFVQDYGVWVYGILFAIVFAETGLVVLPFLPGDSLLFIAGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
MCATGAMNEWVLAGLLLLAAVTGNTVNYMVGSWIGPKVFDHQWRFLDQKALLKTHMFYEK
HHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HGGKTLVMARFIPIVRTFAPFVAGVSQMTFARFQLFNVIGAVIWVFGLVFAGYFFGNLPF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IKQYLNLIVLAGIGAAVVPLVLGGLWKLVRGKARDTRAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDTALQLLDMVLHVDKFLGQFVQDYGVWVYGILFAIVFAETGLVVLPFLPGDSLLFIAGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
MCATGAMNEWVLAGLLLLAAVTGNTVNYMVGSWIGPKVFDHQWRFLDQKALLKTHMFYEK
HHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HGGKTLVMARFIPIVRTFAPFVAGVSQMTFARFQLFNVIGAVIWVFGLVFAGYFFGNLPF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IKQYLNLIVLAGIGAAVVPLVLGGLWKLVRGKARDTRAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]