Click here to switch to the map view.

The map label for this gene is phaZ2

Identifier: 94311633

GI number: 94311633

Start: 2934351

End: 2935583

Strand: Direct

Name: phaZ2

Synonym: Rmet_2701

Alternate gene names: NA

Gene position: 2934351-2935583 (Clockwise)

Preceding gene: 94311631

Following gene: 94311634

Centisome position: 74.7

GC content: 64.48

Gene sequence:

>1233_bases
ATGCTCTACCAGACCTATCAGCTCTACGCGGATATGATGCAGCCGGCCTGCTCGCTGGCCGACATCGCCTCCACGCTCAT
CTCCGGATACCGTCGCGCCGACAACAGCGAGACGCTGCGCGCGCTACGCGCCTGGTGCGAAGTGCTGGCGCTGGCACGTC
TGACTCACTACCGCCCTCCTTTCGGCATCGACCGCGTGCGTATCAATGGTCGCGGCGAGTATGTGCCCGTGACCGAAGAA
ATCGTCATACGTACGCCGTTCTGCACATTGCTGCGTTTTCGCCGCGAGGGCGCGCCCCAGCAACCGCGTGTGCTGCTGGT
GGCGCCGATGTCCGGCCACTTTGCCACGCTGCTGCGCGGTACCGTGGAAACGATGCTCCGCGACCATGACGTCTACATTA
CCGACTGGCATAACCCCCGTGACATCCCGCTCGTCTGTGGCCGATTCGGCTTCGACGAATTCGTGCATCACCTGATCACG
TTCCTCCACGTATTGGGTGGCAACACGCATGTCGTGGCCGTGTGCCAGCCGACCGTGGCCGCGCTGGCGGCCGCCGCGCT
GATGGCCGAGGACGGCGACCCGGCGCAGCCGCCGAGCCTGACGTTGATGGCGGGCCCGATCGATGCGCGCGTAAATCCCA
CCCGCGTCAACGCGCTGGCTACCAGCCGCCCGATCGAGTGGTTCGAAAACACGCTGATCGGATACGTGCCGCTGCGTTTC
GCCGGCGCGCTGCGACGCGTGTACCCGGGCTTCGTCCAGCTCATCGCGTTCATGAGCATGAACCGCGAGCGCCACGAACA
GGCGCTGCGTGATCTGTATGACCTGCGTGCGCGCGGCGAGCATGGCAAGGCCGACGAAATCCAGACGTTCTATAGCGAGT
ACTTCGCGACCATGGACCTGACGGCCGAGTTCTATCTTGAGACCATCAGCCTGGTCTTCCAGCGCTTTTTGCTGGCCCAG
AAACTGCTCGACGTGGCGGGCCGGCGCGTTTCGACCGACGCGATCCACCGCACCACCCTGCTGACCGTGGAAGGAGAGCG
CGACGACATCTGCGCGATCGGCCAGACCATGGCCGCGCAGGACCTCTGCGCCAGCCTGCGCCCGTACATGCGGATGCACC
ACATCCAGACCGGCGTGGGCCACTACGGCGTGTTCAACGGCAAACGCTGGGAATCGCAGGTCTACCCGCTGCTGCGAGAG
ACCATCCACATGAGCGACGAGATGTTTGGCTGA

Upstream 100 bases:

>100_bases
CCACCAAGCCAGACAAAATTTGCAAACGGCGTGCCAACATCGACGCCCGTGGCATATATATTGCGGCAATGGGGCTCGAC
GGACGTGGGGGGACCGAGCC

Downstream 100 bases:

>100_bases
GCGATGGCGCCTGAATGGGCCGACGAAATGAGCCGACGCCATGGGCCAAAGAGGCAGGGTGCTAACCTTCGGTTCTCCCC
TTATCTTCCGCAGTCGACAT

Product: intracellular poly(3-hydroxybutyrate) depolymerase

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MLYQTYQLYADMMQPACSLADIASTLISGYRRADNSETLRALRAWCEVLALARLTHYRPPFGIDRVRINGRGEYVPVTEE
IVIRTPFCTLLRFRREGAPQQPRVLLVAPMSGHFATLLRGTVETMLRDHDVYITDWHNPRDIPLVCGRFGFDEFVHHLIT
FLHVLGGNTHVVAVCQPTVAALAAAALMAEDGDPAQPPSLTLMAGPIDARVNPTRVNALATSRPIEWFENTLIGYVPLRF
AGALRRVYPGFVQLIAFMSMNRERHEQALRDLYDLRARGEHGKADEIQTFYSEYFATMDLTAEFYLETISLVFQRFLLAQ
KLLDVAGRRVSTDAIHRTTLLTVEGERDDICAIGQTMAAQDLCASLRPYMRMHHIQTGVGHYGVFNGKRWESQVYPLLRE
TIHMSDEMFG

Sequences:

>Translated_410_residues
MLYQTYQLYADMMQPACSLADIASTLISGYRRADNSETLRALRAWCEVLALARLTHYRPPFGIDRVRINGRGEYVPVTEE
IVIRTPFCTLLRFRREGAPQQPRVLLVAPMSGHFATLLRGTVETMLRDHDVYITDWHNPRDIPLVCGRFGFDEFVHHLIT
FLHVLGGNTHVVAVCQPTVAALAAAALMAEDGDPAQPPSLTLMAGPIDARVNPTRVNALATSRPIEWFENTLIGYVPLRF
AGALRRVYPGFVQLIAFMSMNRERHEQALRDLYDLRARGEHGKADEIQTFYSEYFATMDLTAEFYLETISLVFQRFLLAQ
KLLDVAGRRVSTDAIHRTTLLTVEGERDDICAIGQTMAAQDLCASLRPYMRMHHIQTGVGHYGVFNGKRWESQVYPLLRE
TIHMSDEMFG
>Mature_410_residues
MLYQTYQLYADMMQPACSLADIASTLISGYRRADNSETLRALRAWCEVLALARLTHYRPPFGIDRVRINGRGEYVPVTEE
IVIRTPFCTLLRFRREGAPQQPRVLLVAPMSGHFATLLRGTVETMLRDHDVYITDWHNPRDIPLVCGRFGFDEFVHHLIT
FLHVLGGNTHVVAVCQPTVAALAAAALMAEDGDPAQPPSLTLMAGPIDARVNPTRVNALATSRPIEWFENTLIGYVPLRF
AGALRRVYPGFVQLIAFMSMNRERHEQALRDLYDLRARGEHGKADEIQTFYSEYFATMDLTAEFYLETISLVFQRFLLAQ
KLLDVAGRRVSTDAIHRTTLLTVEGERDDICAIGQTMAAQDLCASLRPYMRMHHIQTGVGHYGVFNGKRWESQVYPLLRE
TIHMSDEMFG

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46464; Mature: 46464

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYQTYQLYADMMQPACSLADIASTLISGYRRADNSETLRALRAWCEVLALARLTHYRPP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
FGIDRVRINGRGEYVPVTEEIVIRTPFCTLLRFRREGAPQQPRVLLVAPMSGHFATLLRG
CCCCEEEECCCCCEECCCHHHEEECHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH
TVETMLRDHDVYITDWHNPRDIPLVCGRFGFDEFVHHLITFLHVLGGNTHVVAVCQPTVA
HHHHHHCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
ALAAAALMAEDGDPAQPPSLTLMAGPIDARVNPTRVNALATSRPIEWFENTLIGYVPLRF
HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHH
AGALRRVYPGFVQLIAFMSMNRERHEQALRDLYDLRARGEHGKADEIQTFYSEYFATMDL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TAEFYLETISLVFQRFLLAQKLLDVAGRRVSTDAIHRTTLLTVEGERDDICAIGQTMAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEEEECCCCCHHHHHHHHHHH
DLCASLRPYMRMHHIQTGVGHYGVFNGKRWESQVYPLLRETIHMSDEMFG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYQTYQLYADMMQPACSLADIASTLISGYRRADNSETLRALRAWCEVLALARLTHYRPP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
FGIDRVRINGRGEYVPVTEEIVIRTPFCTLLRFRREGAPQQPRVLLVAPMSGHFATLLRG
CCCCEEEECCCCCEECCCHHHEEECHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH
TVETMLRDHDVYITDWHNPRDIPLVCGRFGFDEFVHHLITFLHVLGGNTHVVAVCQPTVA
HHHHHHCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
ALAAAALMAEDGDPAQPPSLTLMAGPIDARVNPTRVNALATSRPIEWFENTLIGYVPLRF
HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHH
AGALRRVYPGFVQLIAFMSMNRERHEQALRDLYDLRARGEHGKADEIQTFYSEYFATMDL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TAEFYLETISLVFQRFLLAQKLLDVAGRRVSTDAIHRTTLLTVEGERDDICAIGQTMAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEEEECCCCCHHHHHHHHHHH
DLCASLRPYMRMHHIQTGVGHYGVFNGKRWESQVYPLLRETIHMSDEMFG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA