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The map label for this gene is yfdE [H]

Identifier: 94311624

GI number: 94311624

Start: 2923109

End: 2924143

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_2692

Alternate gene names: 94311624

Gene position: 2924143-2923109 (Counterclockwise)

Preceding gene: 94311629

Following gene: 94311623

Centisome position: 74.44

GC content: 69.08

Gene sequence:

>1035_bases
ATGACACCGCCGCTGCAGGGCATCCGCATTGTCGAATTTGAAGGAATCGGCCCTGGGCCGCTGGCGGGCCGGATGCTGGC
CGACATGGGGGCGGAGGTGACGGTCATCGCGCGGCGCCAGCGGGTGGCCGTGGCCGACCAGCTAGGTGGTGACAAGCCCA
GCCCGCTGCGGCGCGGCAAGGTCATCGTGCCACTCGATCTGAAACAGCCCGACGATCTGGCCGAGGCAACGCGGTTGGTG
GACGGCGCCGATGCCTTGATCGAAGGTAACCGTCCGGGTGTGATGGAGCGGCTGGGCCTGGGCCCGGCCGACTGCGCCGC
CCGCAATCCAAAGCTGGTCTATGGGCGCATGACGGGGTGGGGCCAGTCCGGCCCGCTCGCGCAGACCGCCGGACACGACC
TCAACTACGTGGCGCTGACGGGCATGTTGTCGCTGTCGGCCCGCCCGGGCGAGGCGCCGATGATCCCGCCCACCGTGGTC
GGCGATGCGGGCGGCGCGCTGGGGCTGGCGTTTGGTGTCGTCTGCGCCCTGCTTGACGCCCGTGCCTCGGGGCGCGGGCG
TGTGGTCGATGGCGCCATCGTCGACATGGTGGCGATGCTCGGCAGCATCGCGGTGTGGGTGCGCAATAACGGCCAGCTCG
ATGGCCCCACACCCAGCCCGTTCCATCAATCGCCGTTCTATGATGTGTATGGCTGTGCCGATGGTGGATTCATCACGATC
GGTGCGCTGGAGCCGCAGTTCTATGCGTTGTTGCTTGAGCGGCTCGGCATGACCGACGTCGATCCCGCCGCGCAGTATGA
CCACGCGGCCTGGCCTGCGTTGAAGCAGCGTTTCACCAGGCTCTTCGCGAGCGAGCCGCGCGCGCACTGGGACGCGCTGC
TTGGCGGCACTGACGTTTGCTATGCGCCGGTGCTGAGCATCGCGGAAGCGTCGCGGCACCCACACAACGTGGCGCGCGGC
GTGTTCATCGCCCAGGAGGATGGGGCGCTGGACGTGGCGGGCGCGCCGAGGTTTGCGCCGTCAGGGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCGCCGCGACGCCACCGCATCCGGGTTGGTCCCGGTTGCATCGGGGTGCGCTAAGCGTCATACCTGAAGCCATGACTTTT
GCCATCCAAGGAGATCGCGC

Downstream 100 bases:

>100_bases
CCGGAGCGAATGCGCACCGAGCGCATCGAGCGCACTGAGCGGAGAGGGGGGAGAACATGAGATACGTAATGACGATCGTC
GCGCTGTGTCTGGGTGTCTT

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTPPLQGIRIVEFEGIGPGPLAGRMLADMGAEVTVIARRQRVAVADQLGGDKPSPLRRGKVIVPLDLKQPDDLAEATRLV
DGADALIEGNRPGVMERLGLGPADCAARNPKLVYGRMTGWGQSGPLAQTAGHDLNYVALTGMLSLSARPGEAPMIPPTVV
GDAGGALGLAFGVVCALLDARASGRGRVVDGAIVDMVAMLGSIAVWVRNNGQLDGPTPSPFHQSPFYDVYGCADGGFITI
GALEPQFYALLLERLGMTDVDPAAQYDHAAWPALKQRFTRLFASEPRAHWDALLGGTDVCYAPVLSIAEASRHPHNVARG
VFIAQEDGALDVAGAPRFAPSGAA

Sequences:

>Translated_344_residues
MTPPLQGIRIVEFEGIGPGPLAGRMLADMGAEVTVIARRQRVAVADQLGGDKPSPLRRGKVIVPLDLKQPDDLAEATRLV
DGADALIEGNRPGVMERLGLGPADCAARNPKLVYGRMTGWGQSGPLAQTAGHDLNYVALTGMLSLSARPGEAPMIPPTVV
GDAGGALGLAFGVVCALLDARASGRGRVVDGAIVDMVAMLGSIAVWVRNNGQLDGPTPSPFHQSPFYDVYGCADGGFITI
GALEPQFYALLLERLGMTDVDPAAQYDHAAWPALKQRFTRLFASEPRAHWDALLGGTDVCYAPVLSIAEASRHPHNVARG
VFIAQEDGALDVAGAPRFAPSGAA
>Mature_343_residues
TPPLQGIRIVEFEGIGPGPLAGRMLADMGAEVTVIARRQRVAVADQLGGDKPSPLRRGKVIVPLDLKQPDDLAEATRLVD
GADALIEGNRPGVMERLGLGPADCAARNPKLVYGRMTGWGQSGPLAQTAGHDLNYVALTGMLSLSARPGEAPMIPPTVVG
DAGGALGLAFGVVCALLDARASGRGRVVDGAIVDMVAMLGSIAVWVRNNGQLDGPTPSPFHQSPFYDVYGCADGGFITIG
ALEPQFYALLLERLGMTDVDPAAQYDHAAWPALKQRFTRLFASEPRAHWDALLGGTDVCYAPVLSIAEASRHPHNVARGV
FIAQEDGALDVAGAPRFAPSGAA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=346, Percent_Identity=41.3294797687861, Blast_Score=245, Evalue=5e-65,
Organism=Homo sapiens, GI42794625, Length=346, Percent_Identity=41.3294797687861, Blast_Score=244, Evalue=6e-65,
Organism=Homo sapiens, GI266458393, Length=262, Percent_Identity=42.7480916030534, Blast_Score=185, Evalue=5e-47,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=42.4710424710425, Blast_Score=183, Evalue=2e-46,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=45.2554744525547, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=45.2554744525547, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI300863124, Length=332, Percent_Identity=26.5060240963855, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI300863128, Length=355, Percent_Identity=26.1971830985915, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI300863126, Length=352, Percent_Identity=23.0113636363636, Blast_Score=78, Evalue=9e-15,
Organism=Escherichia coli, GI87082093, Length=354, Percent_Identity=27.4011299435028, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1788717, Length=221, Percent_Identity=26.6968325791855, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786222, Length=333, Percent_Identity=26.7267267267267, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=331, Percent_Identity=32.02416918429, Blast_Score=178, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI32564160, Length=327, Percent_Identity=33.3333333333333, Blast_Score=175, Evalue=3e-44,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=40.0576368876081, Blast_Score=239, Evalue=2e-63,
Organism=Drosophila melanogaster, GI24648431, Length=356, Percent_Identity=26.4044943820225, Blast_Score=89, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 35969; Mature: 35837

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPLQGIRIVEFEGIGPGPLAGRMLADMGAEVTVIARRQRVAVADQLGGDKPSPLRRGK
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCHHCCE
VIVPLDLKQPDDLAEATRLVDGADALIEGNRPGVMERLGLGPADCAARNPKLVYGRMTGW
EEEEECCCCCHHHHHHHHHHCCCHHEEECCCCCHHHHHCCCHHHHHCCCCEEEEEECCCC
GQSGPLAQTAGHDLNYVALTGMLSLSARPGEAPMIPPTVVGDAGGALGLAFGVVCALLDA
CCCCCCHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH
RASGRGRVVDGAIVDMVAMLGSIAVWVRNNGQLDGPTPSPFHQSPFYDVYGCADGGFITI
CCCCCCEEECHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE
GALEPQFYALLLERLGMTDVDPAAQYDHAAWPALKQRFTRLFASEPRAHWDALLGGTDVC
ECCCHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHH
YAPVLSIAEASRHPHNVARGVFIAQEDGALDVAGAPRFAPSGAA
HHHHHHHHHHCCCCCHHHHEEEEEECCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
TPPLQGIRIVEFEGIGPGPLAGRMLADMGAEVTVIARRQRVAVADQLGGDKPSPLRRGK
CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCHHCCE
VIVPLDLKQPDDLAEATRLVDGADALIEGNRPGVMERLGLGPADCAARNPKLVYGRMTGW
EEEEECCCCCHHHHHHHHHHCCCHHEEECCCCCHHHHHCCCHHHHHCCCCEEEEEECCCC
GQSGPLAQTAGHDLNYVALTGMLSLSARPGEAPMIPPTVVGDAGGALGLAFGVVCALLDA
CCCCCCHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH
RASGRGRVVDGAIVDMVAMLGSIAVWVRNNGQLDGPTPSPFHQSPFYDVYGCADGGFITI
CCCCCCEEECHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE
GALEPQFYALLLERLGMTDVDPAAQYDHAAWPALKQRFTRLFASEPRAHWDALLGGTDVC
ECCCHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHH
YAPVLSIAEASRHPHNVARGVFIAQEDGALDVAGAPRFAPSGAA
HHHHHHHHHHCCCCCHHHHEEEEEECCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]