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The map label for this gene is ybbN [H]

Identifier: 94311572

GI number: 94311572

Start: 2872719

End: 2873561

Strand: Direct

Name: ybbN [H]

Synonym: Rmet_2636

Alternate gene names: 94311572

Gene position: 2872719-2873561 (Clockwise)

Preceding gene: 94311570

Following gene: 94311574

Centisome position: 73.13

GC content: 65.12

Gene sequence:

>843_bases
ATGAGCGACGTCACCCTGCAGAACTTTGAAGCCGATGTCATTGAGATGTCGCGCCAGGTCCCCGTGCTGGTCGACTTCTG
GGCGCCGTGGTGCGGCCCGTGCCGCACGTTGGGACCGATGCTGGAAAAGCTGGAGGCGGAATCTGGCGGCAAGTGGCGGC
TGGCAAAGGTCAACGTCGACGAAAACCAGGAACTCGCCGCCCATTTCGGCGTGCGCAGCATTCCGCATGTGGTGGCATTT
GCCGACGGGCAGGCCGTCGACCAGTTCATCGGCGTGCTACCGGAATCGCAACTACGGGAATTCCTGGATCGCCTGACGCC
GAATCCGGGCGAGTTGGCGCTGCGCGAAGCCGTCGAACTTGCCGCCGCTGGCGACCGCGAAGCCGCGCAGGCATCGTTCC
AGGCCGCACTGGCCTACGATCCGGGCGCAGACACCGCACGCCTGACGTACATCGGGTTCCTGCTGGACGGCAACAAGATC
GCCGATGCGGAAACCGAGTTCGGCCTGCTCTCTCCGCGCGCCGCGCAGGAAGATGCGTATGCCGCGCTGCAAACGCGCCT
TGAAGCCATGAAGGGAGTGGGCGATCTGCCCGATGGCGCCGATCTGAAGGCGCGGGTGGCGGCGAATCCGGCCGATCTGC
CAGCGCGACTGGATCTGGCGCATGTACTGATCGCCCGTCGCGAGTACGAAGCCGCGCTTGAGCAACTGCTGGAAATCGTG
CGGAGCGACCGCTGGTTCGAAGACGACGTTGGCCGCAAGACCATGCTCTCGGTGTTCGAGCTCATGGGCGACGACCCGGC
GGTATCACGGTGGCGCCGCCAACTCGCCACCGTCCTGAACTGA

Upstream 100 bases:

>100_bases
CCGTACGTGGGGTTGCTGAGGTTGTTTTCGGCGCTTACGCCCTCACAATAAGAAGGTCAGGCCGTACCCGACGGCCCTTT
CAATTCCGAGGTGCAGAACA

Downstream 100 bases:

>100_bases
ATTTGAGGTAGCTGACGGTCCAGTCGGACCGTCAGGCCGCAGGTGCCTCGACCAGCGAGAAGCCGTTGGCTTTCATGTGC
TCCACCATCATCGTATCCAT

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSDVTLQNFEADVIEMSRQVPVLVDFWAPWCGPCRTLGPMLEKLEAESGGKWRLAKVNVDENQELAAHFGVRSIPHVVAF
ADGQAVDQFIGVLPESQLREFLDRLTPNPGELALREAVELAAAGDREAAQASFQAALAYDPGADTARLTYIGFLLDGNKI
ADAETEFGLLSPRAAQEDAYAALQTRLEAMKGVGDLPDGADLKARVAANPADLPARLDLAHVLIARREYEAALEQLLEIV
RSDRWFEDDVGRKTMLSVFELMGDDPAVSRWRRQLATVLN

Sequences:

>Translated_280_residues
MSDVTLQNFEADVIEMSRQVPVLVDFWAPWCGPCRTLGPMLEKLEAESGGKWRLAKVNVDENQELAAHFGVRSIPHVVAF
ADGQAVDQFIGVLPESQLREFLDRLTPNPGELALREAVELAAAGDREAAQASFQAALAYDPGADTARLTYIGFLLDGNKI
ADAETEFGLLSPRAAQEDAYAALQTRLEAMKGVGDLPDGADLKARVAANPADLPARLDLAHVLIARREYEAALEQLLEIV
RSDRWFEDDVGRKTMLSVFELMGDDPAVSRWRRQLATVLN
>Mature_279_residues
SDVTLQNFEADVIEMSRQVPVLVDFWAPWCGPCRTLGPMLEKLEAESGGKWRLAKVNVDENQELAAHFGVRSIPHVVAFA
DGQAVDQFIGVLPESQLREFLDRLTPNPGELALREAVELAAAGDREAAQASFQAALAYDPGADTARLTYIGFLLDGNKIA
DAETEFGLLSPRAAQEDAYAALQTRLEAMKGVGDLPDGADLKARVAANPADLPARLDLAHVLIARREYEAALEQLLEIVR
SDRWFEDDVGRKTMLSVFELMGDDPAVSRWRRQLATVLN

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=90, Percent_Identity=45.5555555555556, Blast_Score=95, Evalue=7e-20,
Organism=Escherichia coli, GI87081747, Length=268, Percent_Identity=33.5820895522388, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788936, Length=84, Percent_Identity=45.2380952380952, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082331, Length=107, Percent_Identity=40.1869158878505, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=44.4444444444444, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28573567, Length=105, Percent_Identity=40.9523809523809, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24639068, Length=101, Percent_Identity=36.6336633663366, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24664269, Length=70, Percent_Identity=41.4285714285714, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21358065, Length=84, Percent_Identity=39.2857142857143, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639826, Length=70, Percent_Identity=37.1428571428571, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 30743; Mature: 30612

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVTLQNFEADVIEMSRQVPVLVDFWAPWCGPCRTLGPMLEKLEAESGGKWRLAKVNVD
CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
ENQELAAHFGVRSIPHVVAFADGQAVDQFIGVLPESQLREFLDRLTPNPGELALREAVEL
CCHHHHHHHCHHHCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
AAAGDREAAQASFQAALAYDPGADTARLTYIGFLLDGNKIADAETEFGLLSPRAAQEDAY
HHCCCHHHHHHHHHHHEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCCCHHHHHH
AALQTRLEAMKGVGDLPDGADLKARVAANPADLPARLDLAHVLIARREYEAALEQLLEIV
HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RSDRWFEDDVGRKTMLSVFELMGDDPAVSRWRRQLATVLN
HCCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDVTLQNFEADVIEMSRQVPVLVDFWAPWCGPCRTLGPMLEKLEAESGGKWRLAKVNVD
CCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
ENQELAAHFGVRSIPHVVAFADGQAVDQFIGVLPESQLREFLDRLTPNPGELALREAVEL
CCHHHHHHHCHHHCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
AAAGDREAAQASFQAALAYDPGADTARLTYIGFLLDGNKIADAETEFGLLSPRAAQEDAY
HHCCCHHHHHHHHHHHEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCCCHHHHHH
AALQTRLEAMKGVGDLPDGADLKARVAANPADLPARLDLAHVLIARREYEAALEQLLEIV
HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RSDRWFEDDVGRKTMLSVFELMGDDPAVSRWRRQLATVLN
HCCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]