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The map label for this gene is orn [H]

Identifier: 94311510

GI number: 94311510

Start: 2798748

End: 2799365

Strand: Reverse

Name: orn [H]

Synonym: Rmet_2574

Alternate gene names: 94311510

Gene position: 2799365-2798748 (Counterclockwise)

Preceding gene: 94311514

Following gene: 94311509

Centisome position: 71.27

GC content: 61.81

Gene sequence:

>618_bases
ATGACAAGCCCTTCCGCATCCTCCGTCAAAAGTGAAAACAACCTCGTCTGGTTGGACATGGAAATGACCGGCCTGCAGCC
GGACACCGACCGGATTATCGAAGTGGCGGTAGTGGTCACTGACTCCGAACTCAATATCCTGGCCGAAGGGCCCGTGCTGG
TGATCCATCAGCCGGATGCCGTGCTGGACGCGATGGACAACTGGAACAAGGGTACCCACGGCCGCTCGGGCCTGATCGAA
AAGGTCAAGGCGTCCACGCTGACCGAAGCCCAGGCCGAGGCCGAGTTGCTGGCGTTCCTGAAGCGCTGGGTGCCGGCCAA
CAAGTCGCCGATGTGCGGTAATTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTACATGCCCAAGCTCGAGTCGTTCT
TCCACTACCGCAACCTGGACGTCTCGACGCTCAAGGAACTCTGCAAGCGCTGGGAGCCGGCGATCCACAAGGGTTTCACC
AAGCGCCAGCTTCACACGGCCCTGGCGGACATCCTGGAATCGGTGGAAGAACTGCGCTACTACCGCCAGCATTTCATCAA
GACGTCGGCTTCCGCCACGCCCGAGGCGCCCGAGGCACCCCAGGCACCAGCAGCCTGA

Upstream 100 bases:

>100_bases
GGGGCGGATATGCGAGAATTATAAATTGTTCGCCCGCCGTACCCTTGGGTAACTCGTCGGGCGCTCTTATCCGACCTCCA
TATCGAGCCGTACCGCCAGA

Downstream 100 bases:

>100_bases
CCGTTCAAGAGCAGTACCTCCACGCGGCGGGCCGGTGCGCGGCCTCCACCGCGCCACCCTGTCGCCCCCGCCCATGTTCA
CGCGCATCGTCTCGATCATC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTSPSASSVKSENNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVLVIHQPDAVLDAMDNWNKGTHGRSGLIE
KVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRFMARYMPKLESFFHYRNLDVSTLKELCKRWEPAIHKGFT
KRQLHTALADILESVEELRYYRQHFIKTSASATPEAPEAPQAPAA

Sequences:

>Translated_205_residues
MTSPSASSVKSENNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVLVIHQPDAVLDAMDNWNKGTHGRSGLIE
KVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRFMARYMPKLESFFHYRNLDVSTLKELCKRWEPAIHKGFT
KRQLHTALADILESVEELRYYRQHFIKTSASATPEAPEAPQAPAA
>Mature_204_residues
TSPSASSVKSENNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVLVIHQPDAVLDAMDNWNKGTHGRSGLIEK
VKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRFMARYMPKLESFFHYRNLDVSTLKELCKRWEPAIHKGFTK
RQLHTALADILESVEELRYYRQHFIKTSASATPEAPEAPQAPAA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=49.7109826589595, Blast_Score=187, Evalue=6e-48,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=63.8418079096045, Blast_Score=251, Evalue=3e-68,
Organism=Caenorhabditis elegans, GI17557752, Length=193, Percent_Identity=46.6321243523316, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=40.6593406593407, Blast_Score=127, Evalue=9e-31,
Organism=Drosophila melanogaster, GI21355135, Length=183, Percent_Identity=40.9836065573771, Blast_Score=166, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22979; Mature: 22848

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPSASSVKSENNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVLVIHQPDA
CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHEEEEEEEEECCCCEEEECCCEEEEECCHH
VLDAMDNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDR
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
RFMARYMPKLESFFHYRNLDVSTLKELCKRWEPAIHKGFTKRQLHTALADILESVEELRY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YRQHFIKTSASATPEAPEAPQAPAA
HHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSPSASSVKSENNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVLVIHQPDA
CCCCCCCCCCCCCEEEEEEEECCCCCCHHHEEEEEEEEECCCCEEEECCCEEEEECCHH
VLDAMDNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDR
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
RFMARYMPKLESFFHYRNLDVSTLKELCKRWEPAIHKGFTKRQLHTALADILESVEELRY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YRQHFIKTSASATPEAPEAPQAPAA
HHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]