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The map label for this gene is tnpR [H]

Identifier: 94311495

GI number: 94311495

Start: 2782320

End: 2782988

Strand: Reverse

Name: tnpR [H]

Synonym: Rmet_2559

Alternate gene names: 94311495

Gene position: 2782988-2782320 (Counterclockwise)

Preceding gene: 335055613

Following gene: 94311494

Centisome position: 70.85

GC content: 59.79

Gene sequence:

>669_bases
ATGGCAATTCGAGCGTATCTCCGTGCGTCCACTGCGGACCAAGATGCAGACCGCGCAAGGGAGAGCCTGACCAAGTTCGC
CACAGAGCAGGGCGCACGTATCACGACCTTCTATGTTGAGAACGCCTCGGGAGCCTCCTTGGACCGCAACGAACTAGACC
GCCTCATTGATGAGTCACGGTCTGGCGATGTCCTGTTGGTGGAAGGTATCGACCGCCTGACCCGGTTGACTCAGGATGAT
TGGAAGACCTTGAAGCAGCGCCTAGCGAGCAAGTGCATTCTGATCTGCGCCAAGTTCGTCCCGATGACTCACGATGTCCT
CCAGGCTACGCAGGCTCAGCGATCAGACTGGGCACACGATGCGGTCAAAGCGGCAATCCGTGACTTGATGATTGAGCTTG
CAGCAGCGAAGGCCCGAGAGGACTACGAGGTGCGCCGTGAGCGTGCTGAGCAGGGTATCGCTAGGCGGAAGGCAAAGGAT
GCCGCTGGGGAAACCGACAGACCCGGCTACGGGGGGCGCAAGGCAGACGCAGACATGCACCGGAAGATCATTGACCTACG
GAAGCGGGGCATGTCCTACAGCCAGATAGTGGACACCCTAGGGACAACCCGACCGACCATCTCAAGGGCACTCAAGGCCG
CTGGAATGTTGGGCACTGAGGCGGCGTGA

Upstream 100 bases:

>100_bases
CCAGCGAACCACAGCCCATTCGGTAACGTAACTAGGTGTTGACATGCCTATTCGTTACTAGTTACGATTCTCACACCTAA
ACGTTACCGAGGGGCACATC

Downstream 100 bases:

>100_bases
GGGCAATTAGCCCCTACATTAGGATCAACCAGTCGTCCTTGCATAACAGGACCAACCAGTTTGGTTGCGCATTAGGACCC
ATAATAGGATCAACCAGTTC

Product: Serine--based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MAIRAYLRASTADQDADRARESLTKFATEQGARITTFYVENASGASLDRNELDRLIDESRSGDVLLVEGIDRLTRLTQDD
WKTLKQRLASKCILICAKFVPMTHDVLQATQAQRSDWAHDAVKAAIRDLMIELAAAKAREDYEVRRERAEQGIARRKAKD
AAGETDRPGYGGRKADADMHRKIIDLRKRGMSYSQIVDTLGTTRPTISRALKAAGMLGTEAA

Sequences:

>Translated_222_residues
MAIRAYLRASTADQDADRARESLTKFATEQGARITTFYVENASGASLDRNELDRLIDESRSGDVLLVEGIDRLTRLTQDD
WKTLKQRLASKCILICAKFVPMTHDVLQATQAQRSDWAHDAVKAAIRDLMIELAAAKAREDYEVRRERAEQGIARRKAKD
AAGETDRPGYGGRKADADMHRKIIDLRKRGMSYSQIVDTLGTTRPTISRALKAAGMLGTEAA
>Mature_221_residues
AIRAYLRASTADQDADRARESLTKFATEQGARITTFYVENASGASLDRNELDRLIDESRSGDVLLVEGIDRLTRLTQDDW
KTLKQRLASKCILICAKFVPMTHDVLQATQAQRSDWAHDAVKAAIRDLMIELAAAKAREDYEVRRERAEQGIARRKAKDA
AGETDRPGYGGRKADADMHRKIIDLRKRGMSYSQIVDTLGTTRPTISRALKAAGMLGTEAA

Specific function: Site-specific recombination protein [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 24696; Mature: 24565

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRAYLRASTADQDADRARESLTKFATEQGARITTFYVENASGASLDRNELDRLIDESR
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCC
SGDVLLVEGIDRLTRLTQDDWKTLKQRLASKCILICAKFVPMTHDVLQATQAQRSDWAHD
CCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
AVKAAIRDLMIELAAAKAREDYEVRRERAEQGIARRKAKDAAGETDRPGYGGRKADADMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
RKIIDLRKRGMSYSQIVDTLGTTRPTISRALKAAGMLGTEAA
HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIRAYLRASTADQDADRARESLTKFATEQGARITTFYVENASGASLDRNELDRLIDESR
CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCC
SGDVLLVEGIDRLTRLTQDDWKTLKQRLASKCILICAKFVPMTHDVLQATQAQRSDWAHD
CCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
AVKAAIRDLMIELAAAKAREDYEVRRERAEQGIARRKAKDAAGETDRPGYGGRKADADMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
RKIIDLRKRGMSYSQIVDTLGTTRPTISRALKAAGMLGTEAA
HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9326365 [H]