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The map label for this gene is ydcO [H]

Identifier: 94311477

GI number: 94311477

Start: 2766916

End: 2768103

Strand: Direct

Name: ydcO [H]

Synonym: Rmet_2541

Alternate gene names: 94311477

Gene position: 2766916-2768103 (Clockwise)

Preceding gene: 94311476

Following gene: 94311479

Centisome position: 70.44

GC content: 66.25

Gene sequence:

>1188_bases
ATGACCGCAGCCCCCCTCAAGCTGTCCGACCTGTCCGTTTCCACCACGGTGGCCGGGCTGATCGCCATGCTGACCGGCTA
CACCAGTTCGCTGGTGCTGATGATCCAGGCCGGACAAGCCGCGCACCTGACCGATGCCCAGATATCGTCCTGGATCTGGG
CGCTATCGATCGGCATGGGTGTCACCACGCTCGGACTATCGCTGCTAATGCGGGTGCCGATCGTGATTGCATGGTCCACG
CCCGGGGCGGCGCTGCTGATCGCATCCCTGCCCGGCGTGCCCTACCCGGAAGCGATTGGCGCGTTCCTGATGGCGGCCCT
GCTAATGACGGCGGCCGGCCTGACCGGCTGGTTCGACAAGCTCATGAAGGCGCTACCGGCCAGCATCGCTTCGGCCTTGC
TGGCCGGCATCCTGTTCCGCATCAGCGTCGACGTATTCGTCCAGGCCCAGCACCAAACGCTGCTATTACTGGTGATGTTC
GCCGTCTACCTGTTTGGACGGCGCTGGTGGCCGCGTTATGCGGTGCCCGGTGTGCTGGTGATCGGCGTGGCGCTGGCCGG
CGTACTCGGCCAATTGCACTTCGAGCAGTTTCACTTCGCCGTAACCATGCCGGTCTGGACCGCACCTGCGTTCTCGGTAT
CGGCATTCGTCAGCATTGCCGTGCCGCTGTTCATCGTGGCGCTGGCGTCCCAGAACATCCCTGGGCTGGCCGTGCTGCGT
GCCGATGGCTACCACGTGCCGGCCAGTCCGCTGATTGCGGTCACGGGCGTGGCGTCGGCCATCCTGGCGCCGTTCGGATC
GCACGGTATCAATCTGGCGGCCATCACGGCCGCGATCTGCACCGGCCCGCAGGCTGACGCCGATCCGCGCCGCCGCTACA
TGGCCGCCGTGGTCTGCGGTATCGGCTACCTGGTCATGGGCATCATGGCAGCCAGCATCGCCGCATTGTTCGCGGCCTTC
CCAAAGGCGCTGGTGGTGGCCGTCGCCGCCTTTGCGCTGCTTGGCTCGATCGCCAATGGGCTGACGGTGGCCATGCAGAC
GCCGGTCGAACGGGAATCGGCCCTGCTGACGTTCATGATCACGGCGTCCGGCATGACGCTGGCAGGCGTCGGCTCGGCGT
TCTGGGGCGTGGTGGGCGGCATGCTCGCGCTGCTGGTGCTCAAGCCGCGCGAGCCAAAGTCCGCTTGA

Upstream 100 bases:

>100_bases
TCTCCCACTTGCGGGAGAGGGGAGAAAACAGAACACCACTCCGGTCATCCCGTGCGAAGATACCGCCCGTTGCCCTCGGG
CCCGCACCGCACGACCCACC

Downstream 100 bases:

>100_bases
TGGTCGCCTGATCGTCGCCTGATGGTCGCCGGGCAACGGCCCAAGCTCAAAGACCCGATCTGCTAGAGCAGCAGGAAGGC
GATGTCCCCCACGCCGATCT

Product: putative benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MTAAPLKLSDLSVSTTVAGLIAMLTGYTSSLVLMIQAGQAAHLTDAQISSWIWALSIGMGVTTLGLSLLMRVPIVIAWST
PGAALLIASLPGVPYPEAIGAFLMAALLMTAAGLTGWFDKLMKALPASIASALLAGILFRISVDVFVQAQHQTLLLLVMF
AVYLFGRRWWPRYAVPGVLVIGVALAGVLGQLHFEQFHFAVTMPVWTAPAFSVSAFVSIAVPLFIVALASQNIPGLAVLR
ADGYHVPASPLIAVTGVASAILAPFGSHGINLAAITAAICTGPQADADPRRRYMAAVVCGIGYLVMGIMAASIAALFAAF
PKALVVAVAAFALLGSIANGLTVAMQTPVERESALLTFMITASGMTLAGVGSAFWGVVGGMLALLVLKPREPKSA

Sequences:

>Translated_395_residues
MTAAPLKLSDLSVSTTVAGLIAMLTGYTSSLVLMIQAGQAAHLTDAQISSWIWALSIGMGVTTLGLSLLMRVPIVIAWST
PGAALLIASLPGVPYPEAIGAFLMAALLMTAAGLTGWFDKLMKALPASIASALLAGILFRISVDVFVQAQHQTLLLLVMF
AVYLFGRRWWPRYAVPGVLVIGVALAGVLGQLHFEQFHFAVTMPVWTAPAFSVSAFVSIAVPLFIVALASQNIPGLAVLR
ADGYHVPASPLIAVTGVASAILAPFGSHGINLAAITAAICTGPQADADPRRRYMAAVVCGIGYLVMGIMAASIAALFAAF
PKALVVAVAAFALLGSIANGLTVAMQTPVERESALLTFMITASGMTLAGVGSAFWGVVGGMLALLVLKPREPKSA
>Mature_394_residues
TAAPLKLSDLSVSTTVAGLIAMLTGYTSSLVLMIQAGQAAHLTDAQISSWIWALSIGMGVTTLGLSLLMRVPIVIAWSTP
GAALLIASLPGVPYPEAIGAFLMAALLMTAAGLTGWFDKLMKALPASIASALLAGILFRISVDVFVQAQHQTLLLLVMFA
VYLFGRRWWPRYAVPGVLVIGVALAGVLGQLHFEQFHFAVTMPVWTAPAFSVSAFVSIAVPLFIVALASQNIPGLAVLRA
DGYHVPASPLIAVTGVASAILAPFGSHGINLAAITAAICTGPQADADPRRRYMAAVVCGIGYLVMGIMAASIAALFAAFP
KALVVAVAAFALLGSIANGLTVAMQTPVERESALLTFMITASGMTLAGVGSAFWGVVGGMLALLVLKPREPKSA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=383, Percent_Identity=42.0365535248042, Blast_Score=288, Evalue=3e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40795; Mature: 40664

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPLKLSDLSVSTTVAGLIAMLTGYTSSLVLMIQAGQAAHLTDAQISSWIWALSIGMG
CCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
VTTLGLSLLMRVPIVIAWSTPGAALLIASLPGVPYPEAIGAFLMAALLMTAAGLTGWFDK
HHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
LMKALPASIASALLAGILFRISVDVFVQAQHQTLLLLVMFAVYLFGRRWWPRYAVPGVLV
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
IGVALAGVLGQLHFEQFHFAVTMPVWTAPAFSVSAFVSIAVPLFIVALASQNIPGLAVLR
HHHHHHHHHHHHHHHHEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
ADGYHVPASPLIAVTGVASAILAPFGSHGINLAAITAAICTGPQADADPRRRYMAAVVCG
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IGYLVMGIMAASIAALFAAFPKALVVAVAAFALLGSIANGLTVAMQTPVERESALLTFMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHEEEEEE
TASGMTLAGVGSAFWGVVGGMLALLVLKPREPKSA
EECCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TAAPLKLSDLSVSTTVAGLIAMLTGYTSSLVLMIQAGQAAHLTDAQISSWIWALSIGMG
CCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
VTTLGLSLLMRVPIVIAWSTPGAALLIASLPGVPYPEAIGAFLMAALLMTAAGLTGWFDK
HHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
LMKALPASIASALLAGILFRISVDVFVQAQHQTLLLLVMFAVYLFGRRWWPRYAVPGVLV
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
IGVALAGVLGQLHFEQFHFAVTMPVWTAPAFSVSAFVSIAVPLFIVALASQNIPGLAVLR
HHHHHHHHHHHHHHHHEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
ADGYHVPASPLIAVTGVASAILAPFGSHGINLAAITAAICTGPQADADPRRRYMAAVVCG
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IGYLVMGIMAASIAALFAAFPKALVVAVAAFALLGSIANGLTVAMQTPVERESALLTFMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHEEEEEE
TASGMTLAGVGSAFWGVVGGMLALLVLKPREPKSA
EECCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]