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The map label for this gene is sdhD [H]

Identifier: 94311421

GI number: 94311421

Start: 2699334

End: 2699699

Strand: Reverse

Name: sdhD [H]

Synonym: Rmet_2485

Alternate gene names: 94311421

Gene position: 2699699-2699334 (Counterclockwise)

Preceding gene: 94311422

Following gene: 94311420

Centisome position: 68.73

GC content: 58.47

Gene sequence:

>366_bases
GTGGCAAACAATAATATCGGTCCCAAGCGTCTGGTTGTCGGTGCGCACTACGGTCTGAAAGACTGGCTCGCGCAACGCGT
TACCGCGGTCATCATGGTGGTGTTCACCGTGGTGCTCGCCGCCGTGTATCTCGCCTTCGGCAACCCTTCGTACGAAGGCT
GGTCGGGTCTCTTCGCCAATCAGTGGATGAAGATCCTGACGTTCCTGACCATCCTGTCCCTGCTGTTCCATGCGTGGATC
GGCGTGCGCGATATCTGGATGGACTACGTGAAGCCGATGGCCGTGCGCCTCGTGCTGCAAGTTCTAACGATTCTGTGGCT
CGTCGGTTGCGCGGGCTACGCTGCTCAGATTCTCTGGAGGGTGTAA

Upstream 100 bases:

>100_bases
CTGCCTCGGCCAAGTCGGCTGTCACGGTGCTGGTGGTCAGCCTGCTGCTCACCCTGATCTTCGGTCTGAAGCTGTTCGGT
CTGTTCTGAGGAGAATCAAG

Downstream 100 bases:

>100_bases
TAAATGGTCGCAGTCAAGACTGGATTGCCGCGTCGCAAATTTGACGTGGTCATCGTCGGGGCGGGCGGCGCCGGGATGCG
CGCATCCCTCCAGCTCGCGG

Product: succinate dehydrogenase, membrane subunit, binds cytochrome b556

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MANNNIGPKRLVVGAHYGLKDWLAQRVTAVIMVVFTVVLAAVYLAFGNPSYEGWSGLFANQWMKILTFLTILSLLFHAWI
GVRDIWMDYVKPMAVRLVLQVLTILWLVGCAGYAAQILWRV

Sequences:

>Translated_121_residues
MANNNIGPKRLVVGAHYGLKDWLAQRVTAVIMVVFTVVLAAVYLAFGNPSYEGWSGLFANQWMKILTFLTILSLLFHAWI
GVRDIWMDYVKPMAVRLVLQVLTILWLVGCAGYAAQILWRV
>Mature_120_residues
ANNNIGPKRLVVGAHYGLKDWLAQRVTAVIMVVFTVVLAAVYLAFGNPSYEGWSGLFANQWMKILTFLTILSLLFHAWIG
VRDIWMDYVKPMAVRLVLQVLTILWLVGCAGYAAQILWRV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=83, Percent_Identity=38.5542168674699, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13669; Mature: 13537

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANNNIGPKRLVVGAHYGLKDWLAQRVTAVIMVVFTVVLAAVYLAFGNPSYEGWSGLFAN
CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
QWMKILTFLTILSLLFHAWIGVRDIWMDYVKPMAVRLVLQVLTILWLVGCAGYAAQILWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
V
C
>Mature Secondary Structure 
ANNNIGPKRLVVGAHYGLKDWLAQRVTAVIMVVFTVVLAAVYLAFGNPSYEGWSGLFAN
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
QWMKILTFLTILSLLFHAWIGVRDIWMDYVKPMAVRLVLQVLTILWLVGCAGYAAQILWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]