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The map label for this gene is traR2 [H]

Identifier: 94311336

GI number: 94311336

Start: 2610350

End: 2611240

Strand: Direct

Name: traR2 [H]

Synonym: Rmet_2400

Alternate gene names: 94311336

Gene position: 2610350-2611240 (Clockwise)

Preceding gene: 94311335

Following gene: 94311338

Centisome position: 66.45

GC content: 61.62

Gene sequence:

>891_bases
ATGGAATTACGACATCTGCGCTATTTCATGGCCCTGGCTGAAGAGTTGCATTTCACGCGCGCCGCCGAGCGCCTGCACAT
CGAACAGCCCCCCTTGTCCCGTGCCATCAAAGAACTGGAGGACGAGCTAGGGGTCGTGCTGTTCGACCGGAACCGCCGTG
GAACCGTGCTGACGTCGGCGGGTGTTGTCTTTCTTCAAGATATCCGCAGATTGTTCACCGTGCTCGAACAGGCACGCGAA
AACGCCCAGGCCGTGGCAGCAGGTTTGCGAGGCAGTCTGCGCATCGCGATTTCCGACGGGGCAATCGATGCTCGCCTGTC
GGCATTTCTGGCCCGGTGCCGCGCGGAGGAGCCGGAGATCGAGATACGGCTGTCCGAGGTTCCGCTGGCCGAGCAGTTGC
GCGGCCTGCGGTCCGGGGATTTCATGATCGGATTCGCGCATACGGCCGACGTCGGCGACGACATACGGGCTGAGCCCATC
TGGCGAGATCCATTGGTCATTGCCGTGCCGGCACGGCACGCACTGCTCGCCCACAAAAAGGTCCCGCTCCAAGAAGTCGG
GATCCATCCACTGGTCTTGTGCGATCCCCATGCGTGCGAGGGCTACTGCCGGGAACTGACACGACTGCTGCAGGTGCTTG
AGCACAAGTTGAACGTCGTCGAGGAGGTGTCCTCGCTGGACATGATGCTCACCTTGGTCGGTGCTGGTTACGGTATCGGC
TTTCTCGCGGCGAGCAAGATTCCGGTTTGCCAACGCCCGGACGTGGTGATCCGTCCCCTGGCCATCGATTCAGCCGTCAT
CACGACTTACTTGCTGCGGGCCGACAGCAGTGATTTGTCGGCTTCGCTGGAGCGGTTCATCGTTCGCCTACGTGACTCTG
CGAGCGGCTGA

Upstream 100 bases:

>100_bases
GGGCCTGCTGTTATCGAGATGGCGCGCATGCAGCAAGCGGGATGGATCTACATACGGGCGTAGCACGCGACTGCCGGTTC
GGCATGGGGGGGCTGAGACC

Downstream 100 bases:

>100_bases
AGGCCCCGCTGGCAGACACCCTCAAAGATCGGTTTCGGCACGAAGATTGCGCTCGGTGGCCGCCATCAATTCAGCCGCGC
TTATCCCAAGTGCTACTGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MELRHLRYFMALAEELHFTRAAERLHIEQPPLSRAIKELEDELGVVLFDRNRRGTVLTSAGVVFLQDIRRLFTVLEQARE
NAQAVAAGLRGSLRIAISDGAIDARLSAFLARCRAEEPEIEIRLSEVPLAEQLRGLRSGDFMIGFAHTADVGDDIRAEPI
WRDPLVIAVPARHALLAHKKVPLQEVGIHPLVLCDPHACEGYCRELTRLLQVLEHKLNVVEEVSSLDMMLTLVGAGYGIG
FLAASKIPVCQRPDVVIRPLAIDSAVITTYLLRADSSDLSASLERFIVRLRDSASG

Sequences:

>Translated_296_residues
MELRHLRYFMALAEELHFTRAAERLHIEQPPLSRAIKELEDELGVVLFDRNRRGTVLTSAGVVFLQDIRRLFTVLEQARE
NAQAVAAGLRGSLRIAISDGAIDARLSAFLARCRAEEPEIEIRLSEVPLAEQLRGLRSGDFMIGFAHTADVGDDIRAEPI
WRDPLVIAVPARHALLAHKKVPLQEVGIHPLVLCDPHACEGYCRELTRLLQVLEHKLNVVEEVSSLDMMLTLVGAGYGIG
FLAASKIPVCQRPDVVIRPLAIDSAVITTYLLRADSSDLSASLERFIVRLRDSASG
>Mature_296_residues
MELRHLRYFMALAEELHFTRAAERLHIEQPPLSRAIKELEDELGVVLFDRNRRGTVLTSAGVVFLQDIRRLFTVLEQARE
NAQAVAAGLRGSLRIAISDGAIDARLSAFLARCRAEEPEIEIRLSEVPLAEQLRGLRSGDFMIGFAHTADVGDDIRAEPI
WRDPLVIAVPARHALLAHKKVPLQEVGIHPLVLCDPHACEGYCRELTRLLQVLEHKLNVVEEVSSLDMMLTLVGAGYGIG
FLAASKIPVCQRPDVVIRPLAIDSAVITTYLLRADSSDLSASLERFIVRLRDSASG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=32.312925170068, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788887, Length=287, Percent_Identity=29.616724738676, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI2367136, Length=260, Percent_Identity=31.1538461538462, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI157672245, Length=190, Percent_Identity=35.2631578947368, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790399, Length=262, Percent_Identity=26.7175572519084, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=27.3356401384083, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788748, Length=299, Percent_Identity=28.0936454849498, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788297, Length=127, Percent_Identity=36.2204724409449, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=140, Percent_Identity=35, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=229, Percent_Identity=24.4541484716157, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787806, Length=275, Percent_Identity=26.5454545454545, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081904, Length=196, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=125, Percent_Identity=36.8, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787530, Length=265, Percent_Identity=23.7735849056604, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32806; Mature: 32806

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRHLRYFMALAEELHFTRAAERLHIEQPPLSRAIKELEDELGVVLFDRNRRGTVLTSA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCEEECC
GVVFLQDIRRLFTVLEQARENAQAVAAGLRGSLRIAISDGAIDARLSAFLARCRAEEPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCE
EIRLSEVPLAEQLRGLRSGDFMIGFAHTADVGDDIRAEPIWRDPLVIAVPARHALLAHKK
EEEECCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC
VPLQEVGIHPLVLCDPHACEGYCRELTRLLQVLEHKLNVVEEVSSLDMMLTLVGAGYGIG
CCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
FLAASKIPVCQRPDVVIRPLAIDSAVITTYLLRADSSDLSASLERFIVRLRDSASG
HHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELRHLRYFMALAEELHFTRAAERLHIEQPPLSRAIKELEDELGVVLFDRNRRGTVLTSA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCEEECC
GVVFLQDIRRLFTVLEQARENAQAVAAGLRGSLRIAISDGAIDARLSAFLARCRAEEPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCE
EIRLSEVPLAEQLRGLRSGDFMIGFAHTADVGDDIRAEPIWRDPLVIAVPARHALLAHKK
EEEECCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC
VPLQEVGIHPLVLCDPHACEGYCRELTRLLQVLEHKLNVVEEVSSLDMMLTLVGAGYGIG
CCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
FLAASKIPVCQRPDVVIRPLAIDSAVITTYLLRADSSDLSASLERFIVRLRDSASG
HHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]