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The map label for this gene is radC [C]

Identifier: 94311291

GI number: 94311291

Start: 2568086

End: 2568580

Strand: Direct

Name: radC [C]

Synonym: Rmet_2355

Alternate gene names: 94311291

Gene position: 2568086-2568580 (Clockwise)

Preceding gene: 94311290

Following gene: 94311292

Centisome position: 65.38

GC content: 62.42

Gene sequence:

>495_bases
ATGTCTTTCGTCGTCAATGACTCCTGCCTGGAGTCGCTTTCCGCCATCGCTGCCCAGCACGAGGACTGGATCATCCAGCA
AGCCATTGCGCTGCTGGAGAAGCGGGTTTTCAAAGCGGGTCCGAAACTCCTCGACCCCACGGCCGTGCGCGACTACCTGC
GCGTGAAGCTGGTGGCCGAGCCCAACGAAATATTCGTCGCTGTGTTCCTGGACAGCATGCACCAGGTACTGGCCTACGAG
CCGCTGTTCAGGGGCACGATCAACGCGACTTCGGTCTATCCGCGTGTCGTTGTGCAGCGTGTTCTGCAGTTGAATGCGGC
CGCGGTGGTCTTCGCGCACCAGCACCCCTCGGGCATTTCCGAGCCGTCGAGCGCGGATCGCATGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Upstream 100 bases:

>100_bases
ATCACCGCCACCGCGGTGATGGATGCACCTTGTTCGTTCCCCAGGAGGGCTTGCCCTCCCCGGGCGCGCGCCCTCCGATC
TCACCATTTGGAGGTTCGCC

Downstream 100 bases:

>100_bases
GGGTTGTACTGCTTCGTTGATCAGCGCGGAGGCTTCGGCCTCCGCATTTTTCTGCGCGGCGACACAAGCAGGTATGCGGG
GTGGCCGCGATGCGCATTGT

Product: DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAEPNEIFVAVFLDSMHQVLAYE
PLFRGTINATSVYPRVVVQRVLQLNAAAVVFAHQHPSGISEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAE
SGLL

Sequences:

>Translated_164_residues
MSFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAEPNEIFVAVFLDSMHQVLAYE
PLFRGTINATSVYPRVVVQRVLQLNAAAVVFAHQHPSGISEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAE
SGLL
>Mature_163_residues
SFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAEPNEIFVAVFLDSMHQVLAYEP
LFRGTINATSVYPRVVVQRVLQLNAAAVVFAHQHPSGISEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAES
GLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI2367100, Length=141, Percent_Identity=48.2269503546099, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1788997, Length=140, Percent_Identity=45, Blast_Score=132, Evalue=9e-33,
Organism=Escherichia coli, GI87082300, Length=140, Percent_Identity=40.7142857142857, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1788312, Length=144, Percent_Identity=45.8333333333333, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 17975; Mature: 17844

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAE
CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEC
PNEIFVAVFLDSMHQVLAYEPLFRGTINATSVYPRVVVQRVLQLNAAAVVFAHQHPSGIS
CCCEEHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHCHHHEEEEECCCCCCC
EPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAESGLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCC
>Mature Secondary Structure 
SFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAE
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEC
PNEIFVAVFLDSMHQVLAYEPLFRGTINATSVYPRVVVQRVLQLNAAAVVFAHQHPSGIS
CCCEEHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHCHHHEEEEECCCCCCC
EPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAESGLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA