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The map label for this gene is yhbY [C]

Identifier: 94311128

GI number: 94311128

Start: 2399045

End: 2399554

Strand: Direct

Name: yhbY [C]

Synonym: Rmet_2190

Alternate gene names: 94311128

Gene position: 2399045-2399554 (Clockwise)

Preceding gene: 94311116

Following gene: 94311145

Centisome position: 61.07

GC content: 65.88

Gene sequence:

>510_bases
ATGCCAGCCCTACAACTGATTTCCGCCCAACGCTCCGACCTGCGCTCGCGCGCCCACAGCCTCAATCCCGTGGTCATGAT
CGGTGCGGAAGGCCTGACCCCTGCGGTCCTGGCCGAGATCGACCGGAGCCTGGCGGCTCACGATCTGATCAAGATTCGCG
TCCTCGGTGACGAACGCGACGCACGCATCGCCATTTACGACGCCATTTGTGACGAACTCAGCGCCGCGCCGATCCAGCAC
ATCGGCAAGTTGCTCGTGATCTGGCGTCCGGGCCCTGCCCTCCTGAAGGAGAACCAGCCGGAGGAACTGGGCGCCGCAGC
GCGTCGCCGTGCTACCGGCACAGGCGCCGCGCCACGTACCGTCGTGGTCCGCAAGCCGAGCACCTCCGGTCAACGCCGCC
CTAAGAGCACGGCAGTCACCGTACTGGGCAACGAACGTGTGACCCAGGGTGGTAACGTCAAGCGTTCCCGCGCCCGCCCG
GCCAGCCAGAAGAAGAAAGCACTGGGTTGA

Upstream 100 bases:

>100_bases
GAACGACCGTGCGGAGCTTTTTCTCCCGATTTGGAGATCTTTACCGCCTGCCGGCGATATTTTGGCGGATAATACGCGCC
AAATCGCTATTTGCCCTCTC

Downstream 100 bases:

>100_bases
CCAGTGGCCGAATCGGCCAGTTCCACCAAAAAGGCGGCCGAGGCCGCCTTTTTTCACACCTTTGCTCAGCGTGGCGCGCT
AGCCCGCCACACCAGCACGA

Product: RNA-binding protein, containing KH domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MPALQLISAQRSDLRSRAHSLNPVVMIGAEGLTPAVLAEIDRSLAAHDLIKIRVLGDERDARIAIYDAICDELSAAPIQH
IGKLLVIWRPGPALLKENQPEELGAAARRRATGTGAAPRTVVVRKPSTSGQRRPKSTAVTVLGNERVTQGGNVKRSRARP
ASQKKKALG

Sequences:

>Translated_169_residues
MPALQLISAQRSDLRSRAHSLNPVVMIGAEGLTPAVLAEIDRSLAAHDLIKIRVLGDERDARIAIYDAICDELSAAPIQH
IGKLLVIWRPGPALLKENQPEELGAAARRRATGTGAAPRTVVVRKPSTSGQRRPKSTAVTVLGNERVTQGGNVKRSRARP
ASQKKKALG
>Mature_168_residues
PALQLISAQRSDLRSRAHSLNPVVMIGAEGLTPAVLAEIDRSLAAHDLIKIRVLGDERDARIAIYDAICDELSAAPIQHI
GKLLVIWRPGPALLKENQPEELGAAARRRATGTGAAPRTVVVRKPSTSGQRRPKSTAVTVLGNERVTQGGNVKRSRARPA
SQKKKALG

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=87, Percent_Identity=42.5287356321839, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 18098; Mature: 17967

Theoretical pI: Translated: 11.62; Mature: 11.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALQLISAQRSDLRSRAHSLNPVVMIGAEGLTPAVLAEIDRSLAAHDLIKIRVLGDERD
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCC
ARIAIYDAICDELSAAPIQHIGKLLVIWRPGPALLKENQPEELGAAARRRATGTGAAPRT
CEEEEHHHHHHHHCCCCHHHCCEEEEEECCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCE
VVVRKPSTSGQRRPKSTAVTVLGNERVTQGGNVKRSRARPASQKKKALG
EEEECCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
PALQLISAQRSDLRSRAHSLNPVVMIGAEGLTPAVLAEIDRSLAAHDLIKIRVLGDERD
CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCC
ARIAIYDAICDELSAAPIQHIGKLLVIWRPGPALLKENQPEELGAAARRRATGTGAAPRT
CEEEEHHHHHHHHCCCCHHHCCEEEEEECCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCE
VVVRKPSTSGQRRPKSTAVTVLGNERVTQGGNVKRSRARPASQKKKALG
EEEECCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]