Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 94311079

GI number: 94311079

Start: 2332136

End: 2333086

Strand: Direct

Name: ylbK [H]

Synonym: Rmet_2141

Alternate gene names: 94311079

Gene position: 2332136-2333086 (Clockwise)

Preceding gene: 94311077

Following gene: 94311085

Centisome position: 59.37

GC content: 66.04

Gene sequence:

>951_bases
ATGCAACGACGAAACTTCCTGGGCGCTTCGGCAGCGATGCTGCTGGCAGCCTGCTCCTTCGGCCCCAAGCCGGACGCGAC
AAACCCCGGCACCACTGCCGCCGTGCCACCCGTGGCGACCAACCCGCCCCGGCCAATCCGCATCGGCCTGGCGCTCGGCG
GCGGAGCGGCGCGTGGCTTCGCGCACATTGGCGTGATCAAGGCGCTCGAAGCCCAGGGAATTCGCCCGGATATCGTCACG
GGCACCAGCGCGGGCTCAGTGGTAGCGGCACTCTACGCGTCGGGCATGGATGGCTTTACGTTGAACAAGCTCGCGCTGAC
GATGGACGAAGCGACCATCGCCGACTGGGCCCTGCCCTTCGGCACACGCTTCGGCGGCTGGCTCAAGGGCGAGGCGCTGC
AGAACTACGTCAACCGCCTGGTCAAGAATCGTCCGATCGAGTCGATGAAGCTGCCGCTCGGCATCGTTGCCACGGATCTC
AAGACCGGTGAGCGGATTCTGTTCCGGCGTGGGAATACCGGCCAGGCCGTACGCGCATCGAGCAGCGTCCCGGGCGTATT
CCAGCCGGTGGCGATCGGCGGCCACGACTACGTCGATGGTGGCCTGGTGGAGCCGGTACCAGTGGATGCCGCCCGCGAGA
TGGGCGCCGATTTCGTGATCGCGGTGAATATCTCTGCCGATCCGGCGAGTCAGAAAAATGGCGGGCAGAGTGGTGTCCTG
CTGCAGACGACGGCCATCATGGGGCAGTCGATCAACAAGATGGCGCTGGCGCGCGCCGACGTTGTGATCCGGCCCGACCT
GCCGGATATGGGCGGCAGCGATTTTACGTCGCGCAATCGGGCGATCCTGGCTGGCGAGCAGGCCACATCTGCGGTACTAG
CGGCATTGCGTGAAAAGCTGGCCGCCGCGCGCAATCGTCCGGCGACGGGCGGAACCGTCGCGACACAATAA

Upstream 100 bases:

>100_bases
TGGAATCATTTATGCTGCCGCCAGTCTGACATTCGGCCATACGCGATGCGAGGCCCCATGGGGCCTCCAGCATCACATCC
AGCAAGATCTCCTTCCCTCG

Downstream 100 bases:

>100_bases
GCAGCGACACGCCGCGCCCGAACATCGCTCTCCCCCAAACAACACACAACAAAAAAGGACTGCCTGAGCAGTCCTTTTTT
GTTTTGCCTTCGGGATTTGC

Product: putative alpha/beta hydrolase fold family esterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MQRRNFLGASAAMLLAACSFGPKPDATNPGTTAAVPPVATNPPRPIRIGLALGGGAARGFAHIGVIKALEAQGIRPDIVT
GTSAGSVVAALYASGMDGFTLNKLALTMDEATIADWALPFGTRFGGWLKGEALQNYVNRLVKNRPIESMKLPLGIVATDL
KTGERILFRRGNTGQAVRASSSVPGVFQPVAIGGHDYVDGGLVEPVPVDAAREMGADFVIAVNISADPASQKNGGQSGVL
LQTTAIMGQSINKMALARADVVIRPDLPDMGGSDFTSRNRAILAGEQATSAVLAALREKLAAARNRPATGGTVATQ

Sequences:

>Translated_316_residues
MQRRNFLGASAAMLLAACSFGPKPDATNPGTTAAVPPVATNPPRPIRIGLALGGGAARGFAHIGVIKALEAQGIRPDIVT
GTSAGSVVAALYASGMDGFTLNKLALTMDEATIADWALPFGTRFGGWLKGEALQNYVNRLVKNRPIESMKLPLGIVATDL
KTGERILFRRGNTGQAVRASSSVPGVFQPVAIGGHDYVDGGLVEPVPVDAAREMGADFVIAVNISADPASQKNGGQSGVL
LQTTAIMGQSINKMALARADVVIRPDLPDMGGSDFTSRNRAILAGEQATSAVLAALREKLAAARNRPATGGTVATQ
>Mature_316_residues
MQRRNFLGASAAMLLAACSFGPKPDATNPGTTAAVPPVATNPPRPIRIGLALGGGAARGFAHIGVIKALEAQGIRPDIVT
GTSAGSVVAALYASGMDGFTLNKLALTMDEATIADWALPFGTRFGGWLKGEALQNYVNRLVKNRPIESMKLPLGIVATDL
KTGERILFRRGNTGQAVRASSSVPGVFQPVAIGGHDYVDGGLVEPVPVDAAREMGADFVIAVNISADPASQKNGGQSGVL
LQTTAIMGQSINKMALARADVVIRPDLPDMGGSDFTSRNRAILAGEQATSAVLAALREKLAAARNRPATGGTVATQ

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656037, Length=232, Percent_Identity=33.1896551724138, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI260656041, Length=232, Percent_Identity=33.1896551724138, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI116256487, Length=232, Percent_Identity=33.1896551724138, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI260656039, Length=232, Percent_Identity=33.1896551724138, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI260656043, Length=232, Percent_Identity=33.1896551724138, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI148727335, Length=195, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI148727290, Length=195, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI226510936, Length=293, Percent_Identity=34.8122866894198, Blast_Score=139, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=31.3253012048193, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=31.3253012048193, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193204778, Length=179, Percent_Identity=27.9329608938547, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=197, Percent_Identity=30.9644670050761, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281376913, Length=232, Percent_Identity=30.1724137931034, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28571388, Length=232, Percent_Identity=29.7413793103448, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32563; Mature: 32563

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRNFLGASAAMLLAACSFGPKPDATNPGTTAAVPPVATNPPRPIRIGLALGGGAARGF
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHH
AHIGVIKALEAQGIRPDIVTGTSAGSVVAALYASGMDGFTLNKLALTMDEATIADWALPF
HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHCCC
GTRFGGWLKGEALQNYVNRLVKNRPIESMKLPLGIVATDLKTGERILFRRGNTGQAVRAS
CCCCCCEEECHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEECC
SSVPGVFQPVAIGGHDYVDGGLVEPVPVDAAREMGADFVIAVNISADPASQKNGGQSGVL
CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEE
LQTTAIMGQSINKMALARADVVIRPDLPDMGGSDFTSRNRAILAGEQATSAVLAALREKL
EEEHHHHHCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH
AAARNRPATGGTVATQ
HHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQRRNFLGASAAMLLAACSFGPKPDATNPGTTAAVPPVATNPPRPIRIGLALGGGAARGF
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHH
AHIGVIKALEAQGIRPDIVTGTSAGSVVAALYASGMDGFTLNKLALTMDEATIADWALPF
HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHCCC
GTRFGGWLKGEALQNYVNRLVKNRPIESMKLPLGIVATDLKTGERILFRRGNTGQAVRAS
CCCCCCEEECHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEECC
SSVPGVFQPVAIGGHDYVDGGLVEPVPVDAAREMGADFVIAVNISADPASQKNGGQSGVL
CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEE
LQTTAIMGQSINKMALARADVVIRPDLPDMGGSDFTSRNRAILAGEQATSAVLAALREKL
EEEHHHHHCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH
AAARNRPATGGTVATQ
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]