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The map label for this gene is ycaC [H]

Identifier: 94310858

GI number: 94310858

Start: 2087258

End: 2087884

Strand: Reverse

Name: ycaC [H]

Synonym: Rmet_1920

Alternate gene names: 94310858

Gene position: 2087884-2087258 (Counterclockwise)

Preceding gene: 94310859

Following gene: 94310857

Centisome position: 53.15

GC content: 61.24

Gene sequence:

>627_bases
ATGTCCAAACTACCGTTGCTCGACCCTGCCGATTGCGCCCTGATCCTCGTTGATGAGCAGGCGGGCCTGGCGTTTGCTGC
GGGATCTCAAGACCCGCAGATTCTGCGCAGCAACGGGCTTGCGGTTGCCAAGACGGCGGTCGCCTTCGACTTGCCGGTTG
TGGTTTCGACCTCGGCCTCGAAGGTGTACAGCGGCCCATTGATGCCAGCGTTCCGGGAAGTGCTGAAGGACGTCAACCCG
ATCGAACGGCGCAACATGAATCTGTGGGAAGACGATGCGGTGCGCAATGCGATCACGGCGACCGGAAAGCGTACGCTGAT
CATTGCGGGCTTGCTGACGGAGGCCTGCGTGAGCTTCCCGGTTCTTTCCGCGTTATCAGAGGGGTATCAGGTCTACGTCG
TGGCCGATGCCTGTGGTGGACTGAGCCCGACAAGCCATGAACTCGCGTTGCGACGGATGGCGGCAGCTGGCGCAGTCATG
ACCTCCTGGCTTCAGCTCCTGCTCGAATTCCAGCGGGATTGGACCCGCCACGAAACCTATGAGAAGGCTCGCGCGATTGT
GGTGGAGCATGGTGGTGGGTACGGCACGGGTCTGGCGTATGCGCGTGACATGATCAAACCGGCGTGA

Upstream 100 bases:

>100_bases
GCGCAACGCAGGTTCAATTGCTGAATTTAGTTGAATAGACTTGCTGCGCAGCCCCAGGATTGCAACGAGATTGCAGTCCC
AGACACACAGGAGAATCCAC

Downstream 100 bases:

>100_bases
GCGTCCGTGACGCAGGCGCTCAATGCTCTTCGGAGGACGTAACGGATATGACGGCCATCAGCGATTCGCAATCCCACGAC
AACCCGGCAGCCAGCCTGTG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSKLPLLDPADCALILVDEQAGLAFAAGSQDPQILRSNGLAVAKTAVAFDLPVVVSTSASKVYSGPLMPAFREVLKDVNP
IERRNMNLWEDDAVRNAITATGKRTLIIAGLLTEACVSFPVLSALSEGYQVYVVADACGGLSPTSHELALRRMAAAGAVM
TSWLQLLLEFQRDWTRHETYEKARAIVVEHGGGYGTGLAYARDMIKPA

Sequences:

>Translated_208_residues
MSKLPLLDPADCALILVDEQAGLAFAAGSQDPQILRSNGLAVAKTAVAFDLPVVVSTSASKVYSGPLMPAFREVLKDVNP
IERRNMNLWEDDAVRNAITATGKRTLIIAGLLTEACVSFPVLSALSEGYQVYVVADACGGLSPTSHELALRRMAAAGAVM
TSWLQLLLEFQRDWTRHETYEKARAIVVEHGGGYGTGLAYARDMIKPA
>Mature_207_residues
SKLPLLDPADCALILVDEQAGLAFAAGSQDPQILRSNGLAVAKTAVAFDLPVVVSTSASKVYSGPLMPAFREVLKDVNPI
ERRNMNLWEDDAVRNAITATGKRTLIIAGLLTEACVSFPVLSALSEGYQVYVVADACGGLSPTSHELALRRMAAAGAVMT
SWLQLLLEFQRDWTRHETYEKARAIVVEHGGGYGTGLAYARDMIKPA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=169, Percent_Identity=40.2366863905325, Blast_Score=134, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 22319; Mature: 22188

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLPLLDPADCALILVDEQAGLAFAAGSQDPQILRSNGLAVAKTAVAFDLPVVVSTSAS
CCCCCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHCCCEEEHHHHHEECCEEEECCCH
KVYSGPLMPAFREVLKDVNPIERRNMNLWEDDAVRNAITATGKRTLIIAGLLTEACVSFP
HHHCCCCCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
VLSALSEGYQVYVVADACGGLSPTSHELALRRMAAAGAVMTSWLQLLLEFQRDWTRHETY
HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKARAIVVEHGGGYGTGLAYARDMIKPA
HHHHEEEEECCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SKLPLLDPADCALILVDEQAGLAFAAGSQDPQILRSNGLAVAKTAVAFDLPVVVSTSAS
CCCCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHCCCEEEHHHHHEECCEEEECCCH
KVYSGPLMPAFREVLKDVNPIERRNMNLWEDDAVRNAITATGKRTLIIAGLLTEACVSFP
HHHCCCCCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
VLSALSEGYQVYVVADACGGLSPTSHELALRRMAAAGAVMTSWLQLLLEFQRDWTRHETY
HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKARAIVVEHGGGYGTGLAYARDMIKPA
HHHHEEEEECCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]