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The map label for this gene is yagI [H]

Identifier: 94310756

GI number: 94310756

Start: 1971990

End: 1972784

Strand: Direct

Name: yagI [H]

Synonym: Rmet_1818

Alternate gene names: 94310756

Gene position: 1971990-1972784 (Clockwise)

Preceding gene: 94310755

Following gene: 94310757

Centisome position: 50.2

GC content: 67.8

Gene sequence:

>795_bases
ATGAGCGCCACCGACATCCCTCCGGACGACGCCCGCGACCGCCAGTTCGCCACCACGCTGGCCAACGGACTGGACATCCT
GCTGGCCTATCGGGCAGGCGAATCGCTGCTGGGCAACAAGGACTTTGTGCAGCGCACCGGGCTGTCGAAGTCGACCGTGG
CACGTCTCACCCACACGCTCAGCGCGCTCGGCTATCTGCGTCATGACACCGCGCTTGGCAAATACCGGCTGGGTGCACCC
GTGCTGGCGCCGGGCTACCCGCTGCTGGCCAGCATGCCGATTCGCCAGATTGCGCGGCCGCTGATGAAGGCGCTGGCCGA
CGAAGTGGGCGGCGCGGTCTCGCTCGGCATCCGCGACCGGACGCAGATGATATACGTCGAGACCGCGCGCTCGACGGACA
ACCTCGTGGTGCCGCCCGATATCGGCGCGGCACTGCCAATGCTGACGACGGCCATCGGCAAGGCCTGGCTTTGCCGCGCG
CCGGCAGAACTGCGCGACCCGGTGCTGAACCGCCTGCGCCTGCAGGACCCCGACGCTTTCGCACGTGGTGCGCCGGGACT
GTCCCAGGCACGCAAGGACCTCGAGCGGCTGGGCTACTGTACGAACCGCGCCGAGTGGCGCCATGACGTGTTCGGCTTTG
CCGTTCCTCTGTGCAAGCCCGTTGACTCGCAGTGGTTCGTGATCAACAGCGGCATCCGGGCGCAGCCGGGCAGATTCCAT
GCGGTCGAGCAGTTTGTCGGCCCCCGGCTGGTGACGCTGGCCCACAACCTCGAAGTGCAGCTGGGGCTACGCTGA

Upstream 100 bases:

>100_bases
CCGCGGTGCGCATGACGCCCCGGAAGCTCGAACGCGAGATGGGGCCGCGCCTGCTGAAGCTGGTGGCGCAGGTGGAAACA
CTGGTGGCCTGGGAGTGACG

Downstream 100 bases:

>100_bases
TTCCCGTTCCGGCACCCCGCCGGGACGGGAAAATACAACAGACGAGACGGCCAAAGCGGCCAAAGCGGCCAAAGCGGCCA
AAGCGACCTGGGCGGCAAAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSATDIPPDDARDRQFATTLANGLDILLAYRAGESLLGNKDFVQRTGLSKSTVARLTHTLSALGYLRHDTALGKYRLGAP
VLAPGYPLLASMPIRQIARPLMKALADEVGGAVSLGIRDRTQMIYVETARSTDNLVVPPDIGAALPMLTTAIGKAWLCRA
PAELRDPVLNRLRLQDPDAFARGAPGLSQARKDLERLGYCTNRAEWRHDVFGFAVPLCKPVDSQWFVINSGIRAQPGRFH
AVEQFVGPRLVTLAHNLEVQLGLR

Sequences:

>Translated_264_residues
MSATDIPPDDARDRQFATTLANGLDILLAYRAGESLLGNKDFVQRTGLSKSTVARLTHTLSALGYLRHDTALGKYRLGAP
VLAPGYPLLASMPIRQIARPLMKALADEVGGAVSLGIRDRTQMIYVETARSTDNLVVPPDIGAALPMLTTAIGKAWLCRA
PAELRDPVLNRLRLQDPDAFARGAPGLSQARKDLERLGYCTNRAEWRHDVFGFAVPLCKPVDSQWFVINSGIRAQPGRFH
AVEQFVGPRLVTLAHNLEVQLGLR
>Mature_263_residues
SATDIPPDDARDRQFATTLANGLDILLAYRAGESLLGNKDFVQRTGLSKSTVARLTHTLSALGYLRHDTALGKYRLGAPV
LAPGYPLLASMPIRQIARPLMKALADEVGGAVSLGIRDRTQMIYVETARSTDNLVVPPDIGAALPMLTTAIGKAWLCRAP
AELRDPVLNRLRLQDPDAFARGAPGLSQARKDLERLGYCTNRAEWRHDVFGFAVPLCKPVDSQWFVINSGIRAQPGRFHA
VEQFVGPRLVTLAHNLEVQLGLR

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=146, Percent_Identity=33.5616438356164, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082359, Length=155, Percent_Identity=27.0967741935484, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28842; Mature: 28710

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATDIPPDDARDRQFATTLANGLDILLAYRAGESLLGNKDFVQRTGLSKSTVARLTHTL
CCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHCCHHHHHHCCCCHHHHHHHHHHH
SALGYLRHDTALGKYRLGAPVLAPGYPLLASMPIRQIARPLMKALADEVGGAVSLGIRDR
HHHHHHHHHHHHCCEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCEEEECCCCC
TQMIYVETARSTDNLVVPPDIGAALPMLTTAIGKAWLCRAPAELRDPVLNRLRLQDPDAF
EEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
ARGAPGLSQARKDLERLGYCTNRAEWRHDVFGFAVPLCKPVDSQWFVINSGIRAQPGRFH
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH
AVEQFVGPRLVTLAHNLEVQLGLR
HHHHHHCCEEEEEEECCEEEECCC
>Mature Secondary Structure 
SATDIPPDDARDRQFATTLANGLDILLAYRAGESLLGNKDFVQRTGLSKSTVARLTHTL
CCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHCCHHHHHHCCCCHHHHHHHHHHH
SALGYLRHDTALGKYRLGAPVLAPGYPLLASMPIRQIARPLMKALADEVGGAVSLGIRDR
HHHHHHHHHHHHCCEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCEEEECCCCC
TQMIYVETARSTDNLVVPPDIGAALPMLTTAIGKAWLCRAPAELRDPVLNRLRLQDPDAF
EEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
ARGAPGLSQARKDLERLGYCTNRAEWRHDVFGFAVPLCKPVDSQWFVINSGIRAQPGRFH
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH
AVEQFVGPRLVTLAHNLEVQLGLR
HHHHHHCCEEEEEEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]