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The map label for this gene is ymdC [H]

Identifier: 94310749

GI number: 94310749

Start: 1963448

End: 1965046

Strand: Reverse

Name: ymdC [H]

Synonym: Rmet_1811

Alternate gene names: 94310749

Gene position: 1965046-1963448 (Counterclockwise)

Preceding gene: 94310750

Following gene: 94310744

Centisome position: 50.03

GC content: 63.6

Gene sequence:

>1599_bases
ATGGGAGACACGCGTCGATTGGCGGGTCTGTTTGGTCGTTTCCTGGTTGTCATGATCGCGGCGTTCCTGACGGCCTGCGC
GGGCTTGCCGCAGCGGCCGGAACTGCAGCCCGAAGTGGCGCTGCGCGATACCAGCGATACGGCGATAGCCAGAGAACTGG
CGCCACAACTGGCCGCCCATCCGGGCGAGTCCGTGTTCTATCCGCTGGCCGCAGGTACGGATGCGTTTGCCATGCGTATC
GCACTGGCTCGCGTGGCGCAGCGCTCGCTCGATATCCAGTACTACATTTACGAAACGGACGATACCGGCCTGACGCTGCT
GGCCGCCATCATGGCCGCGGCAGATCGTGGCGTGCGGGTGCGGCTGCTGCTTGATGACATTCATCTGGCCGGGCAGGACA
AGATGCTGCAGGTGATCGACGCGCATCCGAACATCGAGGTGCGGGTGTTCAATCCGTTCGCCAGCCGAAATGTGCGCCTG
CTCGAGTACGTCACCGCTTTCAGCCGGATCAACCGGCGGATGCACAACAAGTCGATGACTGCCGACAACCAGCTCACCAT
CGTCGGCGGACGCAACGTCGGCGACGAGTACTACGGCGCGGCGCAAACCGATTTCAGCGACCTGGATCTTCTGGCGGCCG
GTCCGGTGGTGCCAGAGGTGTCGGCCGTGTTCGACGATTACTGGAACAACGAAGCCGCTTATCCGATCTCGACCCTGGAC
AAGCCGCTCACGGGCAAGGAGGCCGCCGAGCAGCAGGAGAAACTGCGCAACGCCGTCGACGATCGCGCTATCGCCGTGAG
TGCGACGCCGTATGGCAAATCCGTGCTGGAGTCCGGGGTCGTGCATGCGCTTCACCAGGGCACGCTGCCGTCCTTCTGGG
GCCGAGCGACGGTTATCGCCGACAAGGCGGCCAAGATCCAGTTGCCGCCCGACGACGATTCCACGCACGCCATCCCGCAG
CTAGGCAAGATTCTCGACAGCGCCAAGCATGACCTGACGCTGATATCCCCGTACTTCGTGCCGCCCGACGACGCCATGGA
CTGGCTGACCGGGATGCAGAAGCGGGGTGTCCAGGTTCGTATCCTGACCAATTCGTATGGCGCGACGGACGTGACGGCGG
TGCACGCGGGCTATGCGCCGAGGCGCGAGGCCCTGCTGAGGGCAGGGGTGATCCTGTACGAACTGAAGCCATCGGCCTAC
GCCGAACTGGCCAAGGAAAGAAAGTCCCACCGCAGCGGCCCGGGCGGCAGCAGCCGCGCCAGCCTGCACGCCAAGACCTA
CATGGTGGATCGACACCAGTTGTTTATCGGATCCCTGAACCTGGATCCGCGTTCGGCACGGCTCAATACCGAAATGGGTA
TCGTGGTCGACAGCGCGCCGCTATGCGAGATGTTCGGCAAAGTGATCGACGCCGCGTTGCTCGACGTCGCCTACCAGGTC
GTGCTCGAGACCGATCCCGCGACCGGCAAGGAGCAGATGGTGTGGGTGACCCAGGAGGACGGCGTCCTGCGCACGTATCG
CAGCGAGCCCGACATGAACGCCTGGGACCATATCAAACAGGGCGTGTTGCGGATGTTGCCGGTGGAATCGCAGTTGTAG

Upstream 100 bases:

>100_bases
CCGATCCAGCGGCTGGAGACCCAGGTTTGAGGCGGTCGACAGGCAAGGTACGCGTAACGCGGCGCGACATATTCACAACA
TTTACGGGTGAGAGGGGCGA

Downstream 100 bases:

>100_bases
CGAACGACTTTGCGTGTTGTTTTCCCCCTCTCCCGCACGGCGGGGAGAGGGGAGAAGAACCACCGTGGGCTCAGCGCTGC
ACCAGCGCCTTGAAACCCTC

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 531

Protein sequence:

>532_residues
MGDTRRLAGLFGRFLVVMIAAFLTACAGLPQRPELQPEVALRDTSDTAIARELAPQLAAHPGESVFYPLAAGTDAFAMRI
ALARVAQRSLDIQYYIYETDDTGLTLLAAIMAAADRGVRVRLLLDDIHLAGQDKMLQVIDAHPNIEVRVFNPFASRNVRL
LEYVTAFSRINRRMHNKSMTADNQLTIVGGRNVGDEYYGAAQTDFSDLDLLAAGPVVPEVSAVFDDYWNNEAAYPISTLD
KPLTGKEAAEQQEKLRNAVDDRAIAVSATPYGKSVLESGVVHALHQGTLPSFWGRATVIADKAAKIQLPPDDDSTHAIPQ
LGKILDSAKHDLTLISPYFVPPDDAMDWLTGMQKRGVQVRILTNSYGATDVTAVHAGYAPRREALLRAGVILYELKPSAY
AELAKERKSHRSGPGGSSRASLHAKTYMVDRHQLFIGSLNLDPRSARLNTEMGIVVDSAPLCEMFGKVIDAALLDVAYQV
VLETDPATGKEQMVWVTQEDGVLRTYRSEPDMNAWDHIKQGVLRMLPVESQL

Sequences:

>Translated_532_residues
MGDTRRLAGLFGRFLVVMIAAFLTACAGLPQRPELQPEVALRDTSDTAIARELAPQLAAHPGESVFYPLAAGTDAFAMRI
ALARVAQRSLDIQYYIYETDDTGLTLLAAIMAAADRGVRVRLLLDDIHLAGQDKMLQVIDAHPNIEVRVFNPFASRNVRL
LEYVTAFSRINRRMHNKSMTADNQLTIVGGRNVGDEYYGAAQTDFSDLDLLAAGPVVPEVSAVFDDYWNNEAAYPISTLD
KPLTGKEAAEQQEKLRNAVDDRAIAVSATPYGKSVLESGVVHALHQGTLPSFWGRATVIADKAAKIQLPPDDDSTHAIPQ
LGKILDSAKHDLTLISPYFVPPDDAMDWLTGMQKRGVQVRILTNSYGATDVTAVHAGYAPRREALLRAGVILYELKPSAY
AELAKERKSHRSGPGGSSRASLHAKTYMVDRHQLFIGSLNLDPRSARLNTEMGIVVDSAPLCEMFGKVIDAALLDVAYQV
VLETDPATGKEQMVWVTQEDGVLRTYRSEPDMNAWDHIKQGVLRMLPVESQL
>Mature_531_residues
GDTRRLAGLFGRFLVVMIAAFLTACAGLPQRPELQPEVALRDTSDTAIARELAPQLAAHPGESVFYPLAAGTDAFAMRIA
LARVAQRSLDIQYYIYETDDTGLTLLAAIMAAADRGVRVRLLLDDIHLAGQDKMLQVIDAHPNIEVRVFNPFASRNVRLL
EYVTAFSRINRRMHNKSMTADNQLTIVGGRNVGDEYYGAAQTDFSDLDLLAAGPVVPEVSAVFDDYWNNEAAYPISTLDK
PLTGKEAAEQQEKLRNAVDDRAIAVSATPYGKSVLESGVVHALHQGTLPSFWGRATVIADKAAKIQLPPDDDSTHAIPQL
GKILDSAKHDLTLISPYFVPPDDAMDWLTGMQKRGVQVRILTNSYGATDVTAVHAGYAPRREALLRAGVILYELKPSAYA
ELAKERKSHRSGPGGSSRASLHAKTYMVDRHQLFIGSLNLDPRSARLNTEMGIVVDSAPLCEMFGKVIDAALLDVAYQVV
LETDPATGKEQMVWVTQEDGVLRTYRSEPDMNAWDHIKQGVLRMLPVESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=489, Percent_Identity=41.7177914110429, Blast_Score=330, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58318; Mature: 58187

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDTRRLAGLFGRFLVVMIAAFLTACAGLPQRPELQPEVALRDTSDTAIARELAPQLAAH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCC
PGESVFYPLAAGTDAFAMRIALARVAQRSLDIQYYIYETDDTGLTLLAAIMAAADRGVRV
CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEE
RLLLDDIHLAGQDKMLQVIDAHPNIEVRVFNPFASRNVRLLEYVTAFSRINRRMHNKSMT
EEEEECCCCCCCCHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
ADNQLTIVGGRNVGDEYYGAAQTDFSDLDLLAAGPVVPEVSAVFDDYWNNEAAYPISTLD
CCCEEEEEECCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHCC
KPLTGKEAAEQQEKLRNAVDDRAIAVSATPYGKSVLESGVVHALHQGTLPSFWGRATVIA
CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHCCCEEEEE
DKAAKIQLPPDDDSTHAIPQLGKILDSAKHDLTLISPYFVPPDDAMDWLTGMQKRGVQVR
CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
ILTNSYGATDVTAVHAGYAPRREALLRAGVILYELKPSAYAELAKERKSHRSGPGGSSRA
EEECCCCCCCEEEEECCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
SLHAKTYMVDRHQLFIGSLNLDPRSARLNTEMGIVVDSAPLCEMFGKVIDAALLDVAYQV
EEEEEEEEEECEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
VLETDPATGKEQMVWVTQEDGVLRTYRSEPDMNAWDHIKQGVLRMLPVESQL
EEECCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GDTRRLAGLFGRFLVVMIAAFLTACAGLPQRPELQPEVALRDTSDTAIARELAPQLAAH
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCC
PGESVFYPLAAGTDAFAMRIALARVAQRSLDIQYYIYETDDTGLTLLAAIMAAADRGVRV
CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEE
RLLLDDIHLAGQDKMLQVIDAHPNIEVRVFNPFASRNVRLLEYVTAFSRINRRMHNKSMT
EEEEECCCCCCCCHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
ADNQLTIVGGRNVGDEYYGAAQTDFSDLDLLAAGPVVPEVSAVFDDYWNNEAAYPISTLD
CCCEEEEEECCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHCC
KPLTGKEAAEQQEKLRNAVDDRAIAVSATPYGKSVLESGVVHALHQGTLPSFWGRATVIA
CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHCCCEEEEE
DKAAKIQLPPDDDSTHAIPQLGKILDSAKHDLTLISPYFVPPDDAMDWLTGMQKRGVQVR
CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
ILTNSYGATDVTAVHAGYAPRREALLRAGVILYELKPSAYAELAKERKSHRSGPGGSSRA
EEECCCCCCCEEEEECCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
SLHAKTYMVDRHQLFIGSLNLDPRSARLNTEMGIVVDSAPLCEMFGKVIDAALLDVAYQV
EEEEEEEEEECEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
VLETDPATGKEQMVWVTQEDGVLRTYRSEPDMNAWDHIKQGVLRMLPVESQL
EEECCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]