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The map label for this gene is gatA

Identifier: 94310708

GI number: 94310708

Start: 1922029

End: 1923456

Strand: Reverse

Name: gatA

Synonym: Rmet_1770

Alternate gene names: NA

Gene position: 1923456-1922029 (Counterclockwise)

Preceding gene: 94310709

Following gene: 94310707

Centisome position: 48.97

GC content: 67.3

Gene sequence:

>1428_bases
ATGAGCGAGTCCCTCTGCTTTCTGTCGGCCACCGAGTTGGCCGACGCCATCCGGCACAAACGTGTCTCCCCGGTAGACAT
CACTTCCGCAGTCCTGGCGCGCGCGGAGCGCCTTCAACCTGAACTGAACTGCTTCATCACGATCGACGCCGAGCGGGCGA
TGGAATCGGCCCGCCAGGCAGAACGATTGGTCATGGCGGGCGGGCCACTCGGCTTGCTCCACGGCGTGCCGTTCACGGTC
AAGGACATCGTCAACACGCAAGGCGTGCGCACGACTTTCGGCGCGGCGCCGTTGCGGGACAACGTGCCGCAGCAGGACGC
CGTCGCGGTGGCCCGCCTGCGCGAACAGGGCGCCATCCTGATCGGCAAGACCACCACGCCCGAGTTTGGCTCCAAGTGCC
TGACCGATTCGCCGCTGTTCGGGCGCACACGTAACGCGTGGAGCGCGCAACGGACCAGTGGCGGCTCCAGCGGCGGTGCG
GCCGTGGCGGTGGCCAGCGGCATCGCGCCACTGGCTGTCGCCACCGACGGCGGTGGGTCCACGCGGATTCCGGCTGCCTG
TAACGGTGTGGTCGGCATCAAGCAAAGCAACGGTGTGATTCCACATAGCCAGGCGCAGGACCTGTACGGCAACCAGACCT
ATGTCACCCCCACCACGCGCACCGTGGCCGATACTGGCCTGATGATGGCGGCGATGGCGGGCGAGCACGCCTGCGACCCG
TGGTCGATCGGCGTGCCGAAGGCCGACTATGTCGATGCCGCGCGCGCCCAGGGCGATCTGCGTGGCAAGCGCATCCTCTA
TTGCCTGGCGCCGCCGGGCCGCCCAGTGGCGGCGGATGTGGCACGCGCGTTCGAGCGGGGGCTGGCCGCGCTAGCCGGGC
TCGGCGCGGAGCTAGAGCCGTTCGATGGCGACGGCTTCAACGATATCGAGCCGCTTTGGCGCGCGATCAACCACACCGTC
TGGCGCACGCGCTTCGTCGAGATCGTCGAGCGTCATCGCGACGAACTGAGCGCAACGTTCGTACGTCAGGTGGAGTCGGC
CGCGCAAGTCAGCGGCGTGGCGTACCAGCAGGCGATGTTTGACCGTTCGCGGCTGTTCCAGCGCGTGCAGGCGTTGCTCG
AGCGCGCCGACCTGCTGGCGATGCCGACCATCATGCGCACCGCGCTGCCGATCGACCAGGATCTGTTCGGCACGATCGAG
ATCGACGGGCATGTACACGAGAACGTGCGCGCGAACTGGTTTCCGTGGACGATGCCATTCAACATGACCGGCCATCCCGC
GATCAGCCTGCCGTGTGGCTTCGGCAGCGACGATCTGCCGATCGGGCTGCAACTGGTTGGACGGTTCCGCCGCGACACGG
AACTGCTGCGTTGCGCCGCATTGTTCGAATCGGCCCACGGCTTCCTCGACCGGTGGCCGTCGCTGTGA

Upstream 100 bases:

>100_bases
GCTGAGCCGCGCCAGCGGGGTTACCCGGCTTCTCCTGCCGTATCGCTCATGGCAGACTGCGCAAGTTGCTGCAGTTCTTG
ACGTTGCCTTACACGAAACA

Downstream 100 bases:

>100_bases
CGCTACGTGATGCCGATGCCGATACCGATCTCAATATCGAGATCGACGCCGACATCACCACCCTTTGCTTGCCCCTTCCC
AGGCTTCCCGCTTTCACCAC

Product: Asp-tRNA Asn / Glu-tRNA Gln amidotransferase subunit A-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MSESLCFLSATELADAIRHKRVSPVDITSAVLARAERLQPELNCFITIDAERAMESARQAERLVMAGGPLGLLHGVPFTV
KDIVNTQGVRTTFGAAPLRDNVPQQDAVAVARLREQGAILIGKTTTPEFGSKCLTDSPLFGRTRNAWSAQRTSGGSSGGA
AVAVASGIAPLAVATDGGGSTRIPAACNGVVGIKQSNGVIPHSQAQDLYGNQTYVTPTTRTVADTGLMMAAMAGEHACDP
WSIGVPKADYVDAARAQGDLRGKRILYCLAPPGRPVAADVARAFERGLAALAGLGAELEPFDGDGFNDIEPLWRAINHTV
WRTRFVEIVERHRDELSATFVRQVESAAQVSGVAYQQAMFDRSRLFQRVQALLERADLLAMPTIMRTALPIDQDLFGTIE
IDGHVHENVRANWFPWTMPFNMTGHPAISLPCGFGSDDLPIGLQLVGRFRRDTELLRCAALFESAHGFLDRWPSL

Sequences:

>Translated_475_residues
MSESLCFLSATELADAIRHKRVSPVDITSAVLARAERLQPELNCFITIDAERAMESARQAERLVMAGGPLGLLHGVPFTV
KDIVNTQGVRTTFGAAPLRDNVPQQDAVAVARLREQGAILIGKTTTPEFGSKCLTDSPLFGRTRNAWSAQRTSGGSSGGA
AVAVASGIAPLAVATDGGGSTRIPAACNGVVGIKQSNGVIPHSQAQDLYGNQTYVTPTTRTVADTGLMMAAMAGEHACDP
WSIGVPKADYVDAARAQGDLRGKRILYCLAPPGRPVAADVARAFERGLAALAGLGAELEPFDGDGFNDIEPLWRAINHTV
WRTRFVEIVERHRDELSATFVRQVESAAQVSGVAYQQAMFDRSRLFQRVQALLERADLLAMPTIMRTALPIDQDLFGTIE
IDGHVHENVRANWFPWTMPFNMTGHPAISLPCGFGSDDLPIGLQLVGRFRRDTELLRCAALFESAHGFLDRWPSL
>Mature_474_residues
SESLCFLSATELADAIRHKRVSPVDITSAVLARAERLQPELNCFITIDAERAMESARQAERLVMAGGPLGLLHGVPFTVK
DIVNTQGVRTTFGAAPLRDNVPQQDAVAVARLREQGAILIGKTTTPEFGSKCLTDSPLFGRTRNAWSAQRTSGGSSGGAA
VAVASGIAPLAVATDGGGSTRIPAACNGVVGIKQSNGVIPHSQAQDLYGNQTYVTPTTRTVADTGLMMAAMAGEHACDPW
SIGVPKADYVDAARAQGDLRGKRILYCLAPPGRPVAADVARAFERGLAALAGLGAELEPFDGDGFNDIEPLWRAINHTVW
RTRFVEIVERHRDELSATFVRQVESAAQVSGVAYQQAMFDRSRLFQRVQALLERADLLAMPTIMRTALPIDQDLFGTIEI
DGHVHENVRANWFPWTMPFNMTGHPAISLPCGFGSDDLPIGLQLVGRFRRDTELLRCAALFESAHGFLDRWPSL

Specific function: Unknown

COG id: COG0154

COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amidase family [H]

Homologues:

Organism=Homo sapiens, GI222831590, Length=515, Percent_Identity=26.4077669902913, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI195972892, Length=248, Percent_Identity=31.8548387096774, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI166795287, Length=216, Percent_Identity=31.0185185185185, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17537465, Length=497, Percent_Identity=25.7545271629779, Blast_Score=124, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17543272, Length=454, Percent_Identity=27.0925110132159, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17556264, Length=335, Percent_Identity=26.2686567164179, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17538252, Length=198, Percent_Identity=31.3131313131313, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17556276, Length=187, Percent_Identity=31.5508021390374, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17556278, Length=187, Percent_Identity=31.5508021390374, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71990152, Length=299, Percent_Identity=25.4180602006689, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538254, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319685, Length=402, Percent_Identity=28.3582089552239, Blast_Score=109, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6320448, Length=235, Percent_Identity=30.6382978723404, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323950, Length=468, Percent_Identity=22.6495726495727, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24652985, Length=507, Percent_Identity=26.0355029585799, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI19922090, Length=507, Percent_Identity=26.0355029585799, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24652981, Length=507, Percent_Identity=26.0355029585799, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24652983, Length=507, Percent_Identity=26.0355029585799, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24644968, Length=509, Percent_Identity=25.147347740668, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24648113, Length=496, Percent_Identity=27.6209677419355, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI45550774, Length=241, Percent_Identity=28.6307053941909, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24648435, Length=241, Percent_Identity=28.6307053941909, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24648437, Length=241, Percent_Identity=28.6307053941909, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI21356731, Length=484, Percent_Identity=25.4132231404959, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI161078093, Length=508, Percent_Identity=24.8031496062992, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24648441, Length=166, Percent_Identity=31.3253012048193, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648439, Length=166, Percent_Identity=31.3253012048193, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000120
- InterPro:   IPR020556 [H]

Pfam domain/function: PF01425 Amidase [H]

EC number: =3.5.1.4 [H]

Molecular weight: Translated: 51195; Mature: 51064

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESLCFLSATELADAIRHKRVSPVDITSAVLARAERLQPELNCFITIDAERAMESARQA
CCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHH
ERLVMAGGPLGLLHGVPFTVKDIVNTQGVRTTFGAAPLRDNVPQQDAVAVARLREQGAIL
HHEEECCCCHHHHCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCEE
IGKTTTPEFGSKCLTDSPLFGRTRNAWSAQRTSGGSSGGAAVAVASGIAPLAVATDGGGS
EECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCC
TRIPAACNGVVGIKQSNGVIPHSQAQDLYGNQTYVTPTTRTVADTGLMMAAMAGEHACDP
CCCCHHCCCEEEEECCCCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCC
WSIGVPKADYVDAARAQGDLRGKRILYCLAPPGRPVAADVARAFERGLAALAGLGAELEP
CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
FDGDGFNDIEPLWRAINHTVWRTRFVEIVERHRDELSATFVRQVESAAQVSGVAYQQAMF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRSRLFQRVQALLERADLLAMPTIMRTALPIDQDLFGTIEIDGHVHENVRANWFPWTMPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCCCCEECCC
NMTGHPAISLPCGFGSDDLPIGLQLVGRFRRDTELLRCAALFESAHGFLDRWPSL
CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SESLCFLSATELADAIRHKRVSPVDITSAVLARAERLQPELNCFITIDAERAMESARQA
CCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHH
ERLVMAGGPLGLLHGVPFTVKDIVNTQGVRTTFGAAPLRDNVPQQDAVAVARLREQGAIL
HHEEECCCCHHHHCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCEE
IGKTTTPEFGSKCLTDSPLFGRTRNAWSAQRTSGGSSGGAAVAVASGIAPLAVATDGGGS
EECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCC
TRIPAACNGVVGIKQSNGVIPHSQAQDLYGNQTYVTPTTRTVADTGLMMAAMAGEHACDP
CCCCHHCCCEEEEECCCCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCC
WSIGVPKADYVDAARAQGDLRGKRILYCLAPPGRPVAADVARAFERGLAALAGLGAELEP
CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
FDGDGFNDIEPLWRAINHTVWRTRFVEIVERHRDELSATFVRQVESAAQVSGVAYQQAMF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRSRLFQRVQALLERADLLAMPTIMRTALPIDQDLFGTIEIDGHVHENVRANWFPWTMPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCCCCEECCC
NMTGHPAISLPCGFGSDDLPIGLQLVGRFRRDTELLRCAALFESAHGFLDRWPSL
CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]