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The map label for this gene is rbcR [H]

Identifier: 94310705

GI number: 94310705

Start: 1918832

End: 1919716

Strand: Reverse

Name: rbcR [H]

Synonym: Rmet_1767

Alternate gene names: 94310705

Gene position: 1919716-1918832 (Counterclockwise)

Preceding gene: 94310707

Following gene: 94310703

Centisome position: 48.87

GC content: 65.54

Gene sequence:

>885_bases
ATGCGAGAGATCAGCCTGGACCGTTTGCGCACTCTGGTCGCCATTGCAGATCGCGGCTCGTTTGCCGATGCGGCGCGTGC
GTTGCATCTGGCGCCGCCAACGGTCAGCCTCCATATCGCTGAACTCGAAGCCCGCATTGGCGCTCCACTCCTGTCGCGCA
AGCGCGGGCAAGTCAGGCCGTCGGCAATAGGGGAGGTGCTGGTGGAGCGCGCACGCCGGCTGCTGGCCGATGCGGAGCGG
GCGCTGGACGATATTCAACGCCAGGTGCAGGGGCTGGAAGGGCGAGTGCGGCTCGGCGCGTCGACGGGCGCGATCGCGCA
CCTGTTGCCGCAAGCGCTCGAAGGGCTGCGCCAGCACCATCCCGCGATCGACATACAGGTGGCGGTGCTGACTTCACATG
AAACGTTGTCCCGACTGGCGGATGGGACGCTGGACGTTGGGCTGGTTGCACTGCCGCAGCCGCCGGTAGCCGGACTCGTG
ATCAAGCCTTGGCGCCGCGACCCCGTGATGGCTTTCTTGCCGGCGCATTGGGAGTGCCCAGCACGCGTCACGCCTGAATG
GCTCGCCGCCCAACCTCTCATTCTCAATGACGCGACCACGCGACTTTCACGTCTGACTACGGAGTGGTTCGCGACTGCGG
GGTATCATCCCGCGCCCCGCATTCAGCTCAACTACAACGACGCGATCAAGAGTCTGGTGGCGGCCGGCTACGGCGCCTCG
CTACTACCCCTTGAGGAGACGGCGCCATCGCCCGACAAGCGCATTGTCATGCGTCCGCTGCGCCCGGCGTTGTGGCGTCG
GCTCGGTATTGCGCATCGTGCGGGGTACGTTGAGCGTTCCACGCAACACGTGCTTGATATGTTGCGGGATCTGCGGTTGG
CGTAG

Upstream 100 bases:

>100_bases
TAGAACGAAGAGCGAGCCCCTATATTCCGTGGATAGCTACAATAGAGAAAGTTGAATTTCATAACATAAACATTCAGTTT
TTCTGAATCAGGACGCCGAC

Downstream 100 bases:

>100_bases
GCGTTGCCAAAAAAGAAAAAGCCGGCCGAGGGCATTGCGTGCCCTCGGCCGGCCAGTCATCCACTCATCAGCACTTCAAC
GACGTCGATTGCGCTTCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGQVRPSAIGEVLVERARRLLADAER
ALDDIQRQVQGLEGRVRLGASTGAIAHLLPQALEGLRQHHPAIDIQVAVLTSHETLSRLADGTLDVGLVALPQPPVAGLV
IKPWRRDPVMAFLPAHWECPARVTPEWLAAQPLILNDATTRLSRLTTEWFATAGYHPAPRIQLNYNDAIKSLVAAGYGAS
LLPLEETAPSPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDMLRDLRLA

Sequences:

>Translated_294_residues
MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGQVRPSAIGEVLVERARRLLADAER
ALDDIQRQVQGLEGRVRLGASTGAIAHLLPQALEGLRQHHPAIDIQVAVLTSHETLSRLADGTLDVGLVALPQPPVAGLV
IKPWRRDPVMAFLPAHWECPARVTPEWLAAQPLILNDATTRLSRLTTEWFATAGYHPAPRIQLNYNDAIKSLVAAGYGAS
LLPLEETAPSPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDMLRDLRLA
>Mature_294_residues
MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGQVRPSAIGEVLVERARRLLADAER
ALDDIQRQVQGLEGRVRLGASTGAIAHLLPQALEGLRQHHPAIDIQVAVLTSHETLSRLADGTLDVGLVALPQPPVAGLV
IKPWRRDPVMAFLPAHWECPARVTPEWLAAQPLILNDATTRLSRLTTEWFATAGYHPAPRIQLNYNDAIKSLVAAGYGAS
LLPLEETAPSPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDMLRDLRLA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=29.718875502008, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=25.3571428571429, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790208, Length=261, Percent_Identity=26.0536398467433, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=249, Percent_Identity=29.718875502008, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=28.0405405405405, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=26.0330578512397, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=23.574144486692, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=25.6944444444444, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790262, Length=300, Percent_Identity=25.6666666666667, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787601, Length=154, Percent_Identity=27.9220779220779, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=242, Percent_Identity=24.3801652892562, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87081904, Length=154, Percent_Identity=31.1688311688312, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32324; Mature: 32324

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGQVRP
CCCCCHHHHHHHHHHHCCCCHHHHHHEEECCCCCCEEEHHHHHHHHCCHHHHCCCCCCCH
SAIGEVLVERARRLLADAERALDDIQRQVQGLEGRVRLGASTGAIAHLLPQALEGLRQHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
PAIDIQVAVLTSHETLSRLADGTLDVGLVALPQPPVAGLVIKPWRRDPVMAFLPAHWECP
CCEEEEEEEEECHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCC
ARVTPEWLAAQPLILNDATTRLSRLTTEWFATAGYHPAPRIQLNYNDAIKSLVAAGYGAS
CCCCHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCC
LLPLEETAPSPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDMLRDLRLA
CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGQVRP
CCCCCHHHHHHHHHHHCCCCHHHHHHEEECCCCCCEEEHHHHHHHHCCHHHHCCCCCCCH
SAIGEVLVERARRLLADAERALDDIQRQVQGLEGRVRLGASTGAIAHLLPQALEGLRQHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
PAIDIQVAVLTSHETLSRLADGTLDVGLVALPQPPVAGLVIKPWRRDPVMAFLPAHWECP
CCEEEEEEEEECHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCC
ARVTPEWLAAQPLILNDATTRLSRLTTEWFATAGYHPAPRIQLNYNDAIKSLVAAGYGAS
CCCCHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCC
LLPLEETAPSPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDMLRDLRLA
CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA