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The map label for this gene is yfdE [H]

Identifier: 94310667

GI number: 94310667

Start: 1872129

End: 1873346

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_1727

Alternate gene names: 94310667

Gene position: 1873346-1872129 (Counterclockwise)

Preceding gene: 94310668

Following gene: 94310660

Centisome position: 47.69

GC content: 63.79

Gene sequence:

>1218_bases
ATGAGCGCAATCCTGCAGGGCATCAAGGTACTGGACCTGACCCGTGTTGTGGCCGGGCCGTGGGCTACTCAGAACCTGGC
GGACATGGGTGCCACCGTCTACAAGATCGAGAAACCCGGTGATGGCGATGACACGCGTCGGATGGGGCCATTCCTGACCG
ACGGCGATGGCAACGTGACGAACGACTCCGCGTTCTTCCTCTGCTGCAACCGTGGCAAGCAATCGGTCACCGTCGATATT
TCGCAGCCGGAAGGCGCCGAACTGGTACGCCAACTGGCATCGCATTGCGATGTCGTCGTGGAGAACTACAAGGCGGGCAG
CCTGAAGAAGTACGGACTCGACTACGAGAGCATCCGTGCGCTGCGTCCCGACATCATCTATTGCTCCGTGACCGGCTTTG
GTCCGGATGGCCCTTACGCGCCCCGCCCCGCATACGACTTCATCCTGCAAGGCATGGCGGGGCTGATGAGCACCTGCGGG
CAGCCCGATGGCACGCCCGGCGCGGCGCCGATGCGAACCGCGATTCCACTGACGGATATCCTCACGGGGCTGTATGCATC
GGTGGCACTGATGGGCGCGCTCTATCACCGTCAGGCTACCGGTGAGGGGCAATTCATCGATGCCGCGATGATCGATGCCG
CAGTGGCCGCCAACGGCCATCTCGCGCTGGGCTATCACATGACGGGAAAGGTGCCGCAGCGCGCCGGCAACTCCAATCCG
GTGGCATCGCCTTCGGAGGTGTTCGCCTGCCTTGACGGCCACGTCATCATCGCCGCCGGCAACAACGGTCAGTTCGCGGC
GTTGTGCCGCGTGATCGGGTGTGCGTCGTTGATCGAAGATCCGCGATTCCTGCAGAACATGGACCGCGTACGAAATCGCC
CGGTTCTGCGCGAGACATTGGGTGAGCGTCTGCTGAACTGGCGTCTTGCCGACCTGATTCAGGCCCTGGAAGGCGCAGGC
GTGCCATGTGGCCCGATCAACGACATCGACGACGTTTTCGACGATCCGCAAGTCCGGCACCGCGAACTGCTGGTACGCCT
GCCGCACGGCAGTGGTGTCGAGGCGCCGACGCTGCGCAGCCCACTGCGCTTCTCTGCCACGCCGGTCACGATGACCGCGC
CACCGCAACTTGGCCAGCACACCGAAGCCGCGCTCCGGAGCGAATTGGGAATGTCGGCAGCGGACGTGGAGGCCTTCCGG
GAGAGAGGCGTGATCTGA

Upstream 100 bases:

>100_bases
GAACGTATTGGCGGAAACCCTGCCTTTGGCATTGACGAATTGCTGGTGAGTGCTGCGCGCCACATCATGCTGATTCGATC
GACTCGCCTTTCGTCATCGC

Downstream 100 bases:

>100_bases
CGCAACGGACCATGGAATGGACGCGGGCTGCGCAAGGCAGCCCGTTTTTCTTTGTGGTCGGGATATGCCGGCGCTACCGG
CATATCGCATCAGTCCGCAT

Product: putative acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSAILQGIKVLDLTRVVAGPWATQNLADMGATVYKIEKPGDGDDTRRMGPFLTDGDGNVTNDSAFFLCCNRGKQSVTVDI
SQPEGAELVRQLASHCDVVVENYKAGSLKKYGLDYESIRALRPDIIYCSVTGFGPDGPYAPRPAYDFILQGMAGLMSTCG
QPDGTPGAAPMRTAIPLTDILTGLYASVALMGALYHRQATGEGQFIDAAMIDAAVAANGHLALGYHMTGKVPQRAGNSNP
VASPSEVFACLDGHVIIAAGNNGQFAALCRVIGCASLIEDPRFLQNMDRVRNRPVLRETLGERLLNWRLADLIQALEGAG
VPCGPINDIDDVFDDPQVRHRELLVRLPHGSGVEAPTLRSPLRFSATPVTMTAPPQLGQHTEAALRSELGMSAADVEAFR
ERGVI

Sequences:

>Translated_405_residues
MSAILQGIKVLDLTRVVAGPWATQNLADMGATVYKIEKPGDGDDTRRMGPFLTDGDGNVTNDSAFFLCCNRGKQSVTVDI
SQPEGAELVRQLASHCDVVVENYKAGSLKKYGLDYESIRALRPDIIYCSVTGFGPDGPYAPRPAYDFILQGMAGLMSTCG
QPDGTPGAAPMRTAIPLTDILTGLYASVALMGALYHRQATGEGQFIDAAMIDAAVAANGHLALGYHMTGKVPQRAGNSNP
VASPSEVFACLDGHVIIAAGNNGQFAALCRVIGCASLIEDPRFLQNMDRVRNRPVLRETLGERLLNWRLADLIQALEGAG
VPCGPINDIDDVFDDPQVRHRELLVRLPHGSGVEAPTLRSPLRFSATPVTMTAPPQLGQHTEAALRSELGMSAADVEAFR
ERGVI
>Mature_404_residues
SAILQGIKVLDLTRVVAGPWATQNLADMGATVYKIEKPGDGDDTRRMGPFLTDGDGNVTNDSAFFLCCNRGKQSVTVDIS
QPEGAELVRQLASHCDVVVENYKAGSLKKYGLDYESIRALRPDIIYCSVTGFGPDGPYAPRPAYDFILQGMAGLMSTCGQ
PDGTPGAAPMRTAIPLTDILTGLYASVALMGALYHRQATGEGQFIDAAMIDAAVAANGHLALGYHMTGKVPQRAGNSNPV
ASPSEVFACLDGHVIIAAGNNGQFAALCRVIGCASLIEDPRFLQNMDRVRNRPVLRETLGERLLNWRLADLIQALEGAGV
PCGPINDIDDVFDDPQVRHRELLVRLPHGSGVEAPTLRSPLRFSATPVTMTAPPQLGQHTEAALRSELGMSAADVEAFRE
RGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=386, Percent_Identity=39.8963730569948, Blast_Score=301, Evalue=8e-82,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=38.3495145631068, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI300863126, Length=386, Percent_Identity=35.2331606217617, Blast_Score=242, Evalue=4e-64,
Organism=Homo sapiens, GI13376042, Length=412, Percent_Identity=34.2233009708738, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=24.7524752475248, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=24.7524752475248, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458397, Length=279, Percent_Identity=27.9569892473118, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458393, Length=218, Percent_Identity=30.7339449541284, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=30.6666666666667, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=30.6666666666667, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=388, Percent_Identity=35.3092783505155, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1788717, Length=429, Percent_Identity=29.1375291375291, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1786222, Length=412, Percent_Identity=24.5145631067961, Blast_Score=97, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=214, Percent_Identity=27.1028037383178, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=214, Percent_Identity=27.5700934579439, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=37.9652605459057, Blast_Score=276, Evalue=2e-74,
Organism=Drosophila melanogaster, GI24585488, Length=332, Percent_Identity=25.6024096385542, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43256; Mature: 43125

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAILQGIKVLDLTRVVAGPWATQNLADMGATVYKIEKPGDGDDTRRMGPFLTDGDGNVT
CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCHHHCCCEEECCCCCCC
NDSAFFLCCNRGKQSVTVDISQPEGAELVRQLASHCDVVVENYKAGSLKKYGLDYESIRA
CCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHH
LRPDIIYCSVTGFGPDGPYAPRPAYDFILQGMAGLMSTCGQPDGTPGAAPMRTAIPLTDI
CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHH
LTGLYASVALMGALYHRQATGEGQFIDAAMIDAAVAANGHLALGYHMTGKVPQRAGNSNP
HHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCC
VASPSEVFACLDGHVIIAAGNNGQFAALCRVIGCASLIEDPRFLQNMDRVRNRPVLRETL
CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
GERLLNWRLADLIQALEGAGVPCGPINDIDDVFDDPQVRHRELLVRLPHGSGVEAPTLRS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHEEECCCCCCCCCCCCCC
PLRFSATPVTMTAPPQLGQHTEAALRSELGMSAADVEAFRERGVI
CCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SAILQGIKVLDLTRVVAGPWATQNLADMGATVYKIEKPGDGDDTRRMGPFLTDGDGNVT
CHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCHHHCCCEEECCCCCCC
NDSAFFLCCNRGKQSVTVDISQPEGAELVRQLASHCDVVVENYKAGSLKKYGLDYESIRA
CCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHH
LRPDIIYCSVTGFGPDGPYAPRPAYDFILQGMAGLMSTCGQPDGTPGAAPMRTAIPLTDI
CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHH
LTGLYASVALMGALYHRQATGEGQFIDAAMIDAAVAANGHLALGYHMTGKVPQRAGNSNP
HHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCC
VASPSEVFACLDGHVIIAAGNNGQFAALCRVIGCASLIEDPRFLQNMDRVRNRPVLRETL
CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
GERLLNWRLADLIQALEGAGVPCGPINDIDDVFDDPQVRHRELLVRLPHGSGVEAPTLRS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHEEECCCCCCCCCCCCCC
PLRFSATPVTMTAPPQLGQHTEAALRSELGMSAADVEAFRERGVI
CCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]