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The map label for this gene is yjcC [C]

Identifier: 94310629

GI number: 94310629

Start: 1829811

End: 1830845

Strand: Reverse

Name: yjcC [C]

Synonym: Rmet_1689

Alternate gene names: 94310629

Gene position: 1830845-1829811 (Counterclockwise)

Preceding gene: 335055544

Following gene: 94310627

Centisome position: 46.61

GC content: 60.19

Gene sequence:

>1035_bases
ATGATGTACCAGCCCATACTTGACCTCAGGACTGGCGGCATCCTCAAGATCGAGGCGCTTGCCCGGCTGCTGGACGACGA
AGACGTCCTGCTTCCGGCCTCCTTCCTGCCCCATCTTGACCCTGAGCATCTCCTTGAGCTCTACGTTCTTGGCCTGGACC
AGGCGCTGCAGGAACAACGAAATTGGCTGGATCATGGCAAAGCCATCGGATTTGCAATCAATGTTCCTCCGGACGGCCTT
GACGATCCGCGCTACTACGATGCAACCGTCAAGGCACTAGCGCGCCACGATCGCGCGCCGCAATTGCTTACGCTCGAAAT
TCTTGAGTCAGAAGGACTGAGCGATACCAATGAAGCGTTGACCCAGTTCAACCGATTCAGGACGCTTGGCGTATGCATGG
CCGAGGATGATCTGGGTTATGGACACAGCAGCTTGATCCGTTTGCGGCGCCTACCCTTCGACTGCATCAAGATTGACCGC
GATATCGTCGCAATGAGTACCGTCGACGATGTGGATGCGCTGCACTTTGTCTATCAGCTCACGCGACTCGGACATGCCCT
GGGCAAAACCGTGATCGTGGAAGGTGTCGATAGTGTCGGGCTGATCGACGCAATCGGTACTCTTGGCGCCGACGGCGCCC
AGGGCTATGCCGTGGCCCGGCCGATGCCAGCGCGGCAGCTTTCGGACTGGCTGGAGAATCGACAAGGGCCCCCTTCCAGC
GTGCCCTCCAGCAGCGCTCCTGGCAGACTCGCACACCTTGTTGTCGCCGAGGAACGTCTACTCGCGGGTGGGCAGGACTT
TCCGGTGGTCGACCTGCGCTGCGCCGGTCTGGCACACGATTCGGCGTATACATGCATGGCGCAGACATGTCGGACTTGCA
GACTCGCGCGTTTCCGCGACGAGGTGCACACAACCTTCGGGCCGCTGACCAACGTTGGCTCGGAAGTGAACGAATTGCTG
CAGGCGGCAACCCGGGACGGCGTGAGTGCTCTAGCGTATCGGACGGCCCGCCGCAAATTGGCCGCGGCGATGTAA

Upstream 100 bases:

>100_bases
ACCGCAGTTCGCCGATACTCACTTGTCTGGCCAGACGCCTGATCCGCCTTGCATTGCTCACGGGCGGGCCGTTGCGCTAT
TGCGGTCCGGGGCGCTGCAG

Downstream 100 bases:

>100_bases
TCCCGTGGCTGATGCTCCTCCTTGGCGGTCGGTATTGCCGCACGGCAGTGGAGCCAGCGTTCCTGTTACAGCGTGGCCTC
CGCACTTCCGATTGACGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MMYQPILDLRTGGILKIEALARLLDDEDVLLPASFLPHLDPEHLLELYVLGLDQALQEQRNWLDHGKAIGFAINVPPDGL
DDPRYYDATVKALARHDRAPQLLTLEILESEGLSDTNEALTQFNRFRTLGVCMAEDDLGYGHSSLIRLRRLPFDCIKIDR
DIVAMSTVDDVDALHFVYQLTRLGHALGKTVIVEGVDSVGLIDAIGTLGADGAQGYAVARPMPARQLSDWLENRQGPPSS
VPSSSAPGRLAHLVVAEERLLAGGQDFPVVDLRCAGLAHDSAYTCMAQTCRTCRLARFRDEVHTTFGPLTNVGSEVNELL
QAATRDGVSALAYRTARRKLAAAM

Sequences:

>Translated_344_residues
MMYQPILDLRTGGILKIEALARLLDDEDVLLPASFLPHLDPEHLLELYVLGLDQALQEQRNWLDHGKAIGFAINVPPDGL
DDPRYYDATVKALARHDRAPQLLTLEILESEGLSDTNEALTQFNRFRTLGVCMAEDDLGYGHSSLIRLRRLPFDCIKIDR
DIVAMSTVDDVDALHFVYQLTRLGHALGKTVIVEGVDSVGLIDAIGTLGADGAQGYAVARPMPARQLSDWLENRQGPPSS
VPSSSAPGRLAHLVVAEERLLAGGQDFPVVDLRCAGLAHDSAYTCMAQTCRTCRLARFRDEVHTTFGPLTNVGSEVNELL
QAATRDGVSALAYRTARRKLAAAM
>Mature_344_residues
MMYQPILDLRTGGILKIEALARLLDDEDVLLPASFLPHLDPEHLLELYVLGLDQALQEQRNWLDHGKAIGFAINVPPDGL
DDPRYYDATVKALARHDRAPQLLTLEILESEGLSDTNEALTQFNRFRTLGVCMAEDDLGYGHSSLIRLRRLPFDCIKIDR
DIVAMSTVDDVDALHFVYQLTRLGHALGKTVIVEGVDSVGLIDAIGTLGADGAQGYAVARPMPARQLSDWLENRQGPPSS
VPSSSAPGRLAHLVVAEERLLAGGQDFPVVDLRCAGLAHDSAYTCMAQTCRTCRLARFRDEVHTTFGPLTNVGSEVNELL
QAATRDGVSALAYRTARRKLAAAM

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=27.0042194092827, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082096, Length=210, Percent_Identity=30, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081921, Length=236, Percent_Identity=27.9661016949153, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787541, Length=234, Percent_Identity=29.4871794871795, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788849, Length=231, Percent_Identity=29.4372294372294, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=26.1802575107296, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI226510982, Length=165, Percent_Identity=29.0909090909091, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786507, Length=130, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787055, Length=236, Percent_Identity=27.9661016949153, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081845, Length=224, Percent_Identity=25.8928571428571, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 37648; Mature: 37648

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYQPILDLRTGGILKIEALARLLDDEDVLLPASFLPHLDPEHLLELYVLGLDQALQEQR
CCCCCCHHHCCCCEEEHHHHHHHHCCCCEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHH
NWLDHGKAIGFAINVPPDGLDDPRYYDATVKALARHDRAPQLLTLEILESEGLSDTNEAL
HHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCHHHHHH
TQFNRFRTLGVCMAEDDLGYGHSSLIRLRRLPFDCIKIDRDIVAMSTVDDVDALHFVYQL
HHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCHHHHHHCCHHEEECCHHHHHHHHHHHHH
TRLGHALGKTVIVEGVDSVGLIDAIGTLGADGAQGYAVARPMPARQLSDWLENRQGPPSS
HHHHHHHCCHHEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCC
VPSSSAPGRLAHLVVAEERLLAGGQDFPVVDLRCAGLAHDSAYTCMAQTCRTCRLARFRD
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
EVHTTFGPLTNVGSEVNELLQAATRDGVSALAYRTARRKLAAAM
HHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMYQPILDLRTGGILKIEALARLLDDEDVLLPASFLPHLDPEHLLELYVLGLDQALQEQR
CCCCCCHHHCCCCEEEHHHHHHHHCCCCEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHH
NWLDHGKAIGFAINVPPDGLDDPRYYDATVKALARHDRAPQLLTLEILESEGLSDTNEAL
HHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCHHHHHH
TQFNRFRTLGVCMAEDDLGYGHSSLIRLRRLPFDCIKIDRDIVAMSTVDDVDALHFVYQL
HHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCHHHHHHCCHHEEECCHHHHHHHHHHHHH
TRLGHALGKTVIVEGVDSVGLIDAIGTLGADGAQGYAVARPMPARQLSDWLENRQGPPSS
HHHHHHHCCHHEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCC
VPSSSAPGRLAHLVVAEERLLAGGQDFPVVDLRCAGLAHDSAYTCMAQTCRTCRLARFRD
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
EVHTTFGPLTNVGSEVNELLQAATRDGVSALAYRTARRKLAAAM
HHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]