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The map label for this gene is yciR [C]

Identifier: 94310628

GI number: 94310628

Start: 1828105

End: 1829745

Strand: Direct

Name: yciR [C]

Synonym: Rmet_1688

Alternate gene names: 94310628

Gene position: 1828105-1829745 (Clockwise)

Preceding gene: 335055543

Following gene: 94310630

Centisome position: 46.54

GC content: 59.72

Gene sequence:

>1641_bases
TTGTTGCAATTCGTCGCTGGCTTTGTGGAAACACCCAAGGCCTGCTGGCCACATTCGTCATTGGGAATGGAATCATATGC
CCAACCGCTAAGGCGTCGAGGTGTCAAAGCCATAGCTGCCGGGGTCGTCGCCCTGACAGCACTGATCGGCGGAAGCACGT
TCGTCATGTTGCGGTTTGACGGATACGTGAAGGCAATCTACGAGCACAACACCGCGCCGATCAGAGAACTCGCAGAAATC
AGGGCACGTGCGACCGACATCCGCCGCTTGCTCTGGCGGCTTGTTGCCTTGCGCGGCCGCGAAGAGGAACGCCAGGCCAT
CGCGGCCATACATGTGAATCTGAGGGCCATCGACAACGCTTGGGCCCGGTATTGCGCGGATGCGCCAGACAATCAGCACG
AGGACGTGCTCGCCACCGAGATCGGGCATCGGCTGACCTTGTTCAGCGGAATCGTCCGGTCTTCGCTGGAGCGGATTTCC
TTCGGCGATCACGATGACACGCGCGACTGGCTGGAGCAGAACGTCGAGGCGCTAAATCAGCTGGATACGCTGATCGCGAG
CGAGGTCGATCTGAACGTCGCCATGGCGGCCGCGCTTCGGCAGGAAAGTGCCACCATGCTGAGCGTGGCCATCACCACCG
CCTTCGCATTTGTGCTGCTGGCGACTGGCGCGATGATTTCGATCGCTATCTTCACGCACCTGGTTCGCCAGCGTGACGAC
GCCATGGAGGAGTCGCGCTATCACCTCTGGCTGGCGGACCAGGCCATCGAGATGACCCTGGATGGCGTCATGATTACGAA
TGCGGAAGGGACGATAGAAAAGGTGAACCCCGCATTTTGCCGCCTCACGGGATACAGCCAGGCCGAACTGGTCGGCAACA
ACCCTCGCATGCTCAACTCCGGACGACAGACGAAGGAGTTTTATCGCGGACTCTGGAAAGCGCTGAGAGAGGCGGGCCAG
TGGAAAGGCGAGCTGTGGAATCGGCGCAAGGATGGTGGCGTGTACCTGGAGTCGTTGTCGATTGCGGGCATTTGCGGGGC
AAACCACGAGTACACGCATTTTGCTGCCATCTGCACTGACATTACGCATCGGCAACAGACTGTAGAGCGGCTTGGCCATC
TTGCCACCCACGACATGCTGACAGGCCTGCCAAACCGGTTTCTGCTCGACGAGCGCCTCAGCCAGGCGCTTGCCCGTGCC
AGGCGCATGCCACAGCCAGTTGCACTCATGTTCCTGGATCTGGACGGATTCAAGGCCGTCAACGATACGCTGGGGCATGG
CGTCGGCGATGAGTTGCTCATCCTGATTGGGCGGGATCTCCAGAACGCGGTGCGCGATTCCGACACGGTTGCACGGATTG
GTGGCGATGAGTTTGCCATCGTTTTGGAAGGCATCGCGGACCAGGACCATCTCCCAATGCTGGCGCGGAGCCTTCTCCGG
ATGATCCGGTCCGCGCGGCAGATCGGCGAACACCAGGTTTTCGTGACGTCCAGCATTGGCATCAGCGTGTACCCGACGGA
TGCATTGACACCCGGAGAACTGTTGAAAAAGGCGGATGTGGCTATGTACCACGCCAAGCGCAATGGAAAAGATGCGTTCT
GTCTTGCCTCGTCAATCGGAAGTGCGGAGGCCACGCTGTAA

Upstream 100 bases:

>100_bases
AGCTCCTGCAATACATATTCCGGCTTTGCCTTGATGCGAATCAACATGGAAGATTGGGGAGGCAGCGAAGTCCCAGTATC
CTGCCCACACTTCAACGTTC

Downstream 100 bases:

>100_bases
CAGGAACGCTGGCTCCACTGCCGTGCGGCAATACCGACCGCCAAGGAGGAGCATCAGCCACGGGATTACATCGCCGCGGC
CAATTTGCGGCGGGCCGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MLQFVAGFVETPKACWPHSSLGMESYAQPLRRRGVKAIAAGVVALTALIGGSTFVMLRFDGYVKAIYEHNTAPIRELAEI
RARATDIRRLLWRLVALRGREEERQAIAAIHVNLRAIDNAWARYCADAPDNQHEDVLATEIGHRLTLFSGIVRSSLERIS
FGDHDDTRDWLEQNVEALNQLDTLIASEVDLNVAMAAALRQESATMLSVAITTAFAFVLLATGAMISIAIFTHLVRQRDD
AMEESRYHLWLADQAIEMTLDGVMITNAEGTIEKVNPAFCRLTGYSQAELVGNNPRMLNSGRQTKEFYRGLWKALREAGQ
WKGELWNRRKDGGVYLESLSIAGICGANHEYTHFAAICTDITHRQQTVERLGHLATHDMLTGLPNRFLLDERLSQALARA
RRMPQPVALMFLDLDGFKAVNDTLGHGVGDELLILIGRDLQNAVRDSDTVARIGGDEFAIVLEGIADQDHLPMLARSLLR
MIRSARQIGEHQVFVTSSIGISVYPTDALTPGELLKKADVAMYHAKRNGKDAFCLASSIGSAEATL

Sequences:

>Translated_546_residues
MLQFVAGFVETPKACWPHSSLGMESYAQPLRRRGVKAIAAGVVALTALIGGSTFVMLRFDGYVKAIYEHNTAPIRELAEI
RARATDIRRLLWRLVALRGREEERQAIAAIHVNLRAIDNAWARYCADAPDNQHEDVLATEIGHRLTLFSGIVRSSLERIS
FGDHDDTRDWLEQNVEALNQLDTLIASEVDLNVAMAAALRQESATMLSVAITTAFAFVLLATGAMISIAIFTHLVRQRDD
AMEESRYHLWLADQAIEMTLDGVMITNAEGTIEKVNPAFCRLTGYSQAELVGNNPRMLNSGRQTKEFYRGLWKALREAGQ
WKGELWNRRKDGGVYLESLSIAGICGANHEYTHFAAICTDITHRQQTVERLGHLATHDMLTGLPNRFLLDERLSQALARA
RRMPQPVALMFLDLDGFKAVNDTLGHGVGDELLILIGRDLQNAVRDSDTVARIGGDEFAIVLEGIADQDHLPMLARSLLR
MIRSARQIGEHQVFVTSSIGISVYPTDALTPGELLKKADVAMYHAKRNGKDAFCLASSIGSAEATL
>Mature_546_residues
MLQFVAGFVETPKACWPHSSLGMESYAQPLRRRGVKAIAAGVVALTALIGGSTFVMLRFDGYVKAIYEHNTAPIRELAEI
RARATDIRRLLWRLVALRGREEERQAIAAIHVNLRAIDNAWARYCADAPDNQHEDVLATEIGHRLTLFSGIVRSSLERIS
FGDHDDTRDWLEQNVEALNQLDTLIASEVDLNVAMAAALRQESATMLSVAITTAFAFVLLATGAMISIAIFTHLVRQRDD
AMEESRYHLWLADQAIEMTLDGVMITNAEGTIEKVNPAFCRLTGYSQAELVGNNPRMLNSGRQTKEFYRGLWKALREAGQ
WKGELWNRRKDGGVYLESLSIAGICGANHEYTHFAAICTDITHRQQTVERLGHLATHDMLTGLPNRFLLDERLSQALARA
RRMPQPVALMFLDLDGFKAVNDTLGHGVGDELLILIGRDLQNAVRDSDTVARIGGDEFAIVLEGIADQDHLPMLARSLLR
MIRSARQIGEHQVFVTSSIGISVYPTDALTPGELLKKADVAMYHAKRNGKDAFCLASSIGSAEATL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=342, Percent_Identity=27.7777777777778, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1788381, Length=312, Percent_Identity=26.2820512820513, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=33.9506172839506, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=32.9608938547486, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=32.4675324675325, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=36.1290322580645, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=33.75, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=33.8888888888889, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=30.7228915662651, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=34.8387096774194, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=33.112582781457, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=29.559748427673, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 60456; Mature: 60456

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFVAGFVETPKACWPHSSLGMESYAQPLRRRGVKAIAAGVVALTALIGGSTFVMLRFD
CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEC
GYVKAIYEHNTAPIRELAEIRARATDIRRLLWRLVALRGREEERQAIAAIHVNLRAIDNA
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
WARYCADAPDNQHEDVLATEIGHRLTLFSGIVRSSLERISFGDHDDTRDWLEQNVEALNQ
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LDTLIASEVDLNVAMAAALRQESATMLSVAITTAFAFVLLATGAMISIAIFTHLVRQRDD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMEESRYHLWLADQAIEMTLDGVMITNAEGTIEKVNPAFCRLTGYSQAELVGNNPRMLNS
HHHCCCEEEEEECHHHHHEECCEEEECCCCCHHHCCCHHEEECCCCCCEEECCCCHHCCC
GRQTKEFYRGLWKALREAGQWKGELWNRRKDGGVYLESLSIAGICGANHEYTHFAAICTD
CCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHH
ITHRQQTVERLGHLATHDMLTGLPNRFLLDERLSQALARARRMPQPVALMFLDLDGFKAV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH
NDTLGHGVGDELLILIGRDLQNAVRDSDTVARIGGDEFAIVLEGIADQDHLPMLARSLLR
HHHHCCCCCCCEEEEECHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
MIRSARQIGEHQVFVTSSIGISVYPTDALTPGELLKKADVAMYHAKRNGKDAFCLASSIG
HHHHHHHCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHCCC
SAEATL
CCCCCC
>Mature Secondary Structure
MLQFVAGFVETPKACWPHSSLGMESYAQPLRRRGVKAIAAGVVALTALIGGSTFVMLRFD
CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEC
GYVKAIYEHNTAPIRELAEIRARATDIRRLLWRLVALRGREEERQAIAAIHVNLRAIDNA
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
WARYCADAPDNQHEDVLATEIGHRLTLFSGIVRSSLERISFGDHDDTRDWLEQNVEALNQ
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LDTLIASEVDLNVAMAAALRQESATMLSVAITTAFAFVLLATGAMISIAIFTHLVRQRDD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMEESRYHLWLADQAIEMTLDGVMITNAEGTIEKVNPAFCRLTGYSQAELVGNNPRMLNS
HHHCCCEEEEEECHHHHHEECCEEEECCCCCHHHCCCHHEEECCCCCCEEECCCCHHCCC
GRQTKEFYRGLWKALREAGQWKGELWNRRKDGGVYLESLSIAGICGANHEYTHFAAICTD
CCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHH
ITHRQQTVERLGHLATHDMLTGLPNRFLLDERLSQALARARRMPQPVALMFLDLDGFKAV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH
NDTLGHGVGDELLILIGRDLQNAVRDSDTVARIGGDEFAIVLEGIADQDHLPMLARSLLR
HHHHCCCCCCCEEEEECHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
MIRSARQIGEHQVFVTSSIGISVYPTDALTPGELLKKADVAMYHAKRNGKDAFCLASSIG
HHHHHHHCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHCCC
SAEATL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]