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The map label for this gene is ybfB [H]

Identifier: 94310622

GI number: 94310622

Start: 1819238

End: 1820473

Strand: Direct

Name: ybfB [H]

Synonym: Rmet_1682

Alternate gene names: 94310622

Gene position: 1819238-1820473 (Clockwise)

Preceding gene: 94310620

Following gene: 335055543

Centisome position: 46.31

GC content: 64.0

Gene sequence:

>1236_bases
ATGTCCTCTCGATCCTCGCTGCGCCCCGTCTTGCCGATTCTCATCGGCGCGTCAGTCATGCTGTCCCTTGCCATGGGACT
GCGTCAGAGTCTCGGAATCTTCGTGCCGCCGCTGACGCGGGACATCGGGATAACGGTGGGCGACTTCACCATCGCGGTAG
CGGTGCAGAACCTCACCTGGGGCTTGCTGCAGCCATTCGCCGGCGCGCTGGCGGTCCGGACCGGTTTTCGTCCGCTGATG
ATGGGGGGATCGTTGCTGTACCTCATTGGCCTGGTGTTGCTGGCCACGGCTAATGGCTTGTGGGCCGTGGTGATTGGTGC
TGGTGTGCTGATTGGCATGGCCATGGCCACTACTGGCACAGCCTTGGCCATGGCCGCGGCGTCGAGCGCGGTCAGTCAGA
ACGTGCGAAGCATGATTCTGGGCCTGGTGTCCGCTTCGGGATCGATCGGCGCAATGATCGCGGCGCCGCTGGGTCAGGGC
ATCACCGGGGAGTGGGGCTGGCGCATGGGCGTGGCAGCCTTTGCAGTGCTGGCGGTCGTGATGTTGCCCGCCGCATGGTT
TGCGGGCCGCGCGGACAAGGTGCGGGAAGCGCCGGCGGCGCGGGCGCAGCCAGAACAGAGCGGCCGCCAGGCCCTGATGA
CCGCGCTGCGACACCCTCCGTTCGTCGTCATGGCGCTCGCCTATACGGTATGCGGCATGCAACTGGTCTTCCTGACCACG
CACCTTCCCGCATATCTGGAAGTCTGCGGCATGGATCCGATGTTATCCGCCAAGGCGCTCGGCCTGATCGGCGGATTCAA
TATTCTGGGAAGCCTGTTCTTTGGATGGGCCGGCGGCAGGGTCAACAAGCTGCTATTGCTGGGTGGCATCTACATCTGCC
GATCCATCGGCTTCATCTGGTTCTTCCATGCCCTGCCGACACCAGAAAGCACGATGATGTTCTCCGCGATCATGGGCTTT
CTGTGGCTCGGTGTGTCGCCGCTGGTGCAGGGGTGGATTGCCCAGACGTTTGGTCTGCGCTGGCAGGCAATGATCGCCGG
CGTGGCGTTCTTCAGCCATCAGATCGGCAGTTTCATTGGCGCCTTCGGTGGCGGCTGGCTCTACGACCAGATGCAGAGTT
ACTCGCTGGCGTGGAAGGTCGGTGCGTCGCTTGGCTTGACCCTCGGGCTGATCCAGGTTGCGTTCGCCTTTGCTTCCAGG
CCGCGGGCGCCACGGCTGGTGCCCGCGGCGGAGTAG

Upstream 100 bases:

>100_bases
GGCCAGTACTGGTGTTCGGGAGCATTTCCTTGACGGCGCAATTAATGGAGAATGGGCGAACCTGTCTTCACCACGGCAGG
ACACAAAATAGAACCACGAT

Downstream 100 bases:

>100_bases
GGGCTATCGGCGTTGCCGGCCTCGCGGAGGTGTCGAGTTCGAGATCGGCGGTAGACGGAACGCCGTCCATCGGACGGCTC
CCTCCTTTACGCCATCTGGC

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSSRSSLRPVLPILIGASVMLSLAMGLRQSLGIFVPPLTRDIGITVGDFTIAVAVQNLTWGLLQPFAGALAVRTGFRPLM
MGGSLLYLIGLVLLATANGLWAVVIGAGVLIGMAMATTGTALAMAAASSAVSQNVRSMILGLVSASGSIGAMIAAPLGQG
ITGEWGWRMGVAAFAVLAVVMLPAAWFAGRADKVREAPAARAQPEQSGRQALMTALRHPPFVVMALAYTVCGMQLVFLTT
HLPAYLEVCGMDPMLSAKALGLIGGFNILGSLFFGWAGGRVNKLLLLGGIYICRSIGFIWFFHALPTPESTMMFSAIMGF
LWLGVSPLVQGWIAQTFGLRWQAMIAGVAFFSHQIGSFIGAFGGGWLYDQMQSYSLAWKVGASLGLTLGLIQVAFAFASR
PRAPRLVPAAE

Sequences:

>Translated_411_residues
MSSRSSLRPVLPILIGASVMLSLAMGLRQSLGIFVPPLTRDIGITVGDFTIAVAVQNLTWGLLQPFAGALAVRTGFRPLM
MGGSLLYLIGLVLLATANGLWAVVIGAGVLIGMAMATTGTALAMAAASSAVSQNVRSMILGLVSASGSIGAMIAAPLGQG
ITGEWGWRMGVAAFAVLAVVMLPAAWFAGRADKVREAPAARAQPEQSGRQALMTALRHPPFVVMALAYTVCGMQLVFLTT
HLPAYLEVCGMDPMLSAKALGLIGGFNILGSLFFGWAGGRVNKLLLLGGIYICRSIGFIWFFHALPTPESTMMFSAIMGF
LWLGVSPLVQGWIAQTFGLRWQAMIAGVAFFSHQIGSFIGAFGGGWLYDQMQSYSLAWKVGASLGLTLGLIQVAFAFASR
PRAPRLVPAAE
>Mature_410_residues
SSRSSLRPVLPILIGASVMLSLAMGLRQSLGIFVPPLTRDIGITVGDFTIAVAVQNLTWGLLQPFAGALAVRTGFRPLMM
GGSLLYLIGLVLLATANGLWAVVIGAGVLIGMAMATTGTALAMAAASSAVSQNVRSMILGLVSASGSIGAMIAAPLGQGI
TGEWGWRMGVAAFAVLAVVMLPAAWFAGRADKVREAPAARAQPEQSGRQALMTALRHPPFVVMALAYTVCGMQLVFLTTH
LPAYLEVCGMDPMLSAKALGLIGGFNILGSLFFGWAGGRVNKLLLLGGIYICRSIGFIWFFHALPTPESTMMFSAIMGFL
WLGVSPLVQGWIAQTFGLRWQAMIAGVAFFSHQIGSFIGAFGGGWLYDQMQSYSLAWKVGASLGLTLGLIQVAFAFASRP
RAPRLVPAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43171; Mature: 43040

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRSSLRPVLPILIGASVMLSLAMGLRQSLGIFVPPLTRDIGITVGDFTIAVAVQNLTW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHCCCEECCCEEEEHHHHHHH
GLLQPFAGALAVRTGFRPLMMGGSLLYLIGLVLLATANGLWAVVIGAGVLIGMAMATTGT
HHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ALAMAAASSAVSQNVRSMILGLVSASGSIGAMIAAPLGQGITGEWGWRMGVAAFAVLAVV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
MLPAAWFAGRADKVREAPAARAQPEQSGRQALMTALRHPPFVVMALAYTVCGMQLVFLTT
HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HLPAYLEVCGMDPMLSAKALGLIGGFNILGSLFFGWAGGRVNKLLLLGGIYICRSIGFIW
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FFHALPTPESTMMFSAIMGFLWLGVSPLVQGWIAQTFGLRWQAMIAGVAFFSHQIGSFIG
HHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AFGGGWLYDQMQSYSLAWKVGASLGLTLGLIQVAFAFASRPRAPRLVPAAE
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SSRSSLRPVLPILIGASVMLSLAMGLRQSLGIFVPPLTRDIGITVGDFTIAVAVQNLTW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHCCCEECCCEEEEHHHHHHH
GLLQPFAGALAVRTGFRPLMMGGSLLYLIGLVLLATANGLWAVVIGAGVLIGMAMATTGT
HHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ALAMAAASSAVSQNVRSMILGLVSASGSIGAMIAAPLGQGITGEWGWRMGVAAFAVLAVV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
MLPAAWFAGRADKVREAPAARAQPEQSGRQALMTALRHPPFVVMALAYTVCGMQLVFLTT
HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HLPAYLEVCGMDPMLSAKALGLIGGFNILGSLFFGWAGGRVNKLLLLGGIYICRSIGFIW
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FFHALPTPESTMMFSAIMGFLWLGVSPLVQGWIAQTFGLRWQAMIAGVAFFSHQIGSFIG
HHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AFGGGWLYDQMQSYSLAWKVGASLGLTLGLIQVAFAFASRPRAPRLVPAAE
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]