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The map label for this gene is fimC [H]

Identifier: 94310606

GI number: 94310606

Start: 1802542

End: 1803300

Strand: Reverse

Name: fimC [H]

Synonym: Rmet_1666

Alternate gene names: 94310606

Gene position: 1803300-1802542 (Counterclockwise)

Preceding gene: 94310607

Following gene: 94310605

Centisome position: 45.91

GC content: 52.31

Gene sequence:

>759_bases
ATGGCCACGCGTCACCCCATACCTGCTCTATGCGCCGCGCTAAGCGTCGCGCTTGCATTACAAGCAGGTGTCGCCATCGG
CAGCGTAACCCTGACGGGCACCCGCGTGATCTACGACGGGCGGTCGCCGGGAGAAAGTCTGCAGTTCACTAACCAAGGAA
GCAGCCCCAGCGTGATGCAAGTATGGGTTGACTCTGGAAACGAGCAATCCACTCCAAAAACTGCTGACGCGCCTTTTATT
GTAACTCCACCGGTATTCCGCATTGGCCCCAACGCGGGCCAGACAATTCGCCTTCTATATATGGGTAAGGATTTACCTAA
AGACCGTGAATCTGTCTTTTATTTGAACACCCTGGAGATTCCTTCGTTAAATGCGACATATGCAAACCAGAATCAGATGC
TGGTAATGCTACGCAACAGAATCAAGATACTCTACCGACCGACTGATATAGAAGGAAGTCCTCAGAAGGCAATCGAGAAG
CTCAGCTTTCAGATAGTTCGACAAGGCGCTGACGTAAGTATCGTTGCCAAGAACGAATCCAGCTACCACATATCGCTCGC
GAGCGGGAATTTAAATTGCGGGGGAGACGTGGCGACATTCACCCCTGGCATGATCCCTCCCTACTCCCAACTGGAGTGGA
GTGTAAAGGGGCGTTGTCCTATTGAAAAATCGCCCATCCGCACGAAGGTGCAGTATGTAGATGACTACGGCGCAGTTCGC
GAATCGGAGCATCCGGTAACAGTTGAAGGCGTGCACTAA

Upstream 100 bases:

>100_bases
TATGCAGTGAGTTATCTGTAAATAGCGACCGGAGTTCCTGGGCCTATCTTTTCGGACAGGCTCAGGAGCTTGCGGACGGA
GAAAACTGAGAGTTGTTGAA

Downstream 100 bases:

>100_bases
AATGGTTAACCGGGGAGCCCGTGGCTTTCGTGATTCCGCGAATTGGAGGCATAACAAAACAGTTCTGCTTTCCGCAATAC
TGAGTGCGCTAGGCATTGCC

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MATRHPIPALCAALSVALALQAGVAIGSVTLTGTRVIYDGRSPGESLQFTNQGSSPSVMQVWVDSGNEQSTPKTADAPFI
VTPPVFRIGPNAGQTIRLLYMGKDLPKDRESVFYLNTLEIPSLNATYANQNQMLVMLRNRIKILYRPTDIEGSPQKAIEK
LSFQIVRQGADVSIVAKNESSYHISLASGNLNCGGDVATFTPGMIPPYSQLEWSVKGRCPIEKSPIRTKVQYVDDYGAVR
ESEHPVTVEGVH

Sequences:

>Translated_252_residues
MATRHPIPALCAALSVALALQAGVAIGSVTLTGTRVIYDGRSPGESLQFTNQGSSPSVMQVWVDSGNEQSTPKTADAPFI
VTPPVFRIGPNAGQTIRLLYMGKDLPKDRESVFYLNTLEIPSLNATYANQNQMLVMLRNRIKILYRPTDIEGSPQKAIEK
LSFQIVRQGADVSIVAKNESSYHISLASGNLNCGGDVATFTPGMIPPYSQLEWSVKGRCPIEKSPIRTKVQYVDDYGAVR
ESEHPVTVEGVH
>Mature_251_residues
ATRHPIPALCAALSVALALQAGVAIGSVTLTGTRVIYDGRSPGESLQFTNQGSSPSVMQVWVDSGNEQSTPKTADAPFIV
TPPVFRIGPNAGQTIRLLYMGKDLPKDRESVFYLNTLEIPSLNATYANQNQMLVMLRNRIKILYRPTDIEGSPQKAIEKL
SFQIVRQGADVSIVAKNESSYHISLASGNLNCGGDVATFTPGMIPPYSQLEWSVKGRCPIEKSPIRTKVQYVDDYGAVRE
SEHPVTVEGVH

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=244, Percent_Identity=33.1967213114754, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788428, Length=174, Percent_Identity=33.9080459770115, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789532, Length=163, Percent_Identity=32.5153374233129, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790771, Length=234, Percent_Identity=32.9059829059829, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082203, Length=235, Percent_Identity=29.7872340425532, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786936, Length=210, Percent_Identity=27.1428571428571, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786743, Length=217, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787171, Length=228, Percent_Identity=29.8245614035088, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788677, Length=217, Percent_Identity=30.4147465437788, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27389; Mature: 27257

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRHPIPALCAALSVALALQAGVAIGSVTLTGTRVIYDGRSPGESLQFTNQGSSPSVMQ
CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECEEEEECCCCCCCCEEEECCCCCCCEEE
VWVDSGNEQSTPKTADAPFIVTPPVFRIGPNAGQTIRLLYMGKDLPKDRESVFYLNTLEI
EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECC
PSLNATYANQNQMLVMLRNRIKILYRPTDIEGSPQKAIEKLSFQIVRQGADVSIVAKNES
CCCCCEECCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
SYHISLASGNLNCGGDVATFTPGMIPPYSQLEWSVKGRCPIEKSPIRTKVQYVDDYGAVR
CEEEEEECCCCCCCCCEEECCCCCCCCHHHEEEEECCCCCCCCCCCEEEEEEECCCCCCC
ESEHPVTVEGVH
CCCCCEEEEECC
>Mature Secondary Structure 
ATRHPIPALCAALSVALALQAGVAIGSVTLTGTRVIYDGRSPGESLQFTNQGSSPSVMQ
CCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECEEEEECCCCCCCCEEEECCCCCCCEEE
VWVDSGNEQSTPKTADAPFIVTPPVFRIGPNAGQTIRLLYMGKDLPKDRESVFYLNTLEI
EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECC
PSLNATYANQNQMLVMLRNRIKILYRPTDIEGSPQKAIEKLSFQIVRQGADVSIVAKNES
CCCCCEECCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
SYHISLASGNLNCGGDVATFTPGMIPPYSQLEWSVKGRCPIEKSPIRTKVQYVDDYGAVR
CEEEEEECCCCCCCCCEEECCCCCCCCHHHEEEEECCCCCCCCCCCEEEEEEECCCCCCC
ESEHPVTVEGVH
CCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]