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The map label for this gene is tnp

Identifier: 94310602

GI number: 94310602

Start: 1794805

End: 1795596

Strand: Reverse

Name: tnp

Synonym: Rmet_1660

Alternate gene names: NA

Gene position: 1795596-1794805 (Counterclockwise)

Preceding gene: 335055540

Following gene: 94310601

Centisome position: 45.71

GC content: 60.35

Gene sequence:

>792_bases
GTGATAAAGGAGCTGCCTGCTGGCGTAGCGAAGGTGCTCAAGCGCCTGCACCATCCGCTGGACGTGATCTTGCTGTGTGT
GCGCTGGTACGTGGCCTATTCGCTGAGCCTGCGTGATCTGGAGGAGATGATGGCCGAGCGTGGCCTCGCGGTCGATCATT
CGACGGTCCGCCGCTGGGTCATCAAGCTACTGCCGCTGTTCGAGAAGGCGTTTCGTCGTCACAAGCAGTCGGTTAGCAAG
AGCTGGCGCATGGACGAGACCTACCTCAAGGTGCGGGGCAAGTGGGCATACCTCTATCGTGCCGTGGACAAAGCCGGCAA
CACCATCGACTTCCTGCTGTGTGCCCGCCGTGACAAGGTTGCGGCCCGGCGTTACTTCGAAAAGGCCATCGGCCAGAACG
GCGCTCCTGATACCGTGGCTATCGACAAAAGCGCGGCCAACCTGGCCGCGCTGCACGCCGTGAATGCGCATCGAGAGACG
CCCATCAGGATCCGTCAGCGCAAGTACCTGAACAACATCGTCGAGCAGGACCATCGGGCCATCAAACGACGAGCACGACC
CATGCTCGGGTTCAAGAATTTCCGTTGCGCGCGCATCCTTATCGGCGGCATCGAAACCATGCATATGATCGCCAAGGGCA
GATGCGGGGACCCGAAGGCATTCGCTTGTCCGCCGCGCAGCAATTCCATTCCCTGGTTTCATAGACCAGCGCACTCCAGC
CCACCGACTTCGACCAACCGGCCTTATCGCGACAGAACCCATCAATGCACTGATCCAGGATGCGCAGCGTGA

Upstream 100 bases:

>100_bases
GTTCAGGGGCAAGCTTCTTGGTTCTGTCGCGCTAAGGGTGCCGGGGTGAGATTTCAGCAGACATTGCCCGGAACGGAAGC
GCGTCGTGAAGAAAGTATCT

Downstream 100 bases:

>100_bases
GCCCTTTGAAGGCATTGGCAAGCCAGAGTCCCTTAAAGGCAACTTGTCAGGTTACTGGTCGCGCCGCATTGACGACACTA
ATCGCCTAGTGTATTTCGCC

Product: transposase (DDE site) ISRme7

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIKELPAGVAKVLKRLHHPLDVILLCVRWYVAYSLSLRDLEEMMAERGLAVDHSTVRRWVIKLLPLFEKAFRRHKQSVSK
SWRMDETYLKVRGKWAYLYRAVDKAGNTIDFLLCARRDKVAARRYFEKAIGQNGAPDTVAIDKSAANLAALHAVNAHRET
PIRIRQRKYLNNIVEQDHRAIKRRARPMLGFKNFRCARILIGGIETMHMIAKGRCGDPKAFACPPRSNSIPWFHRPAHSS
PPTSTNRPYRDRTHQCTDPGCAA

Sequences:

>Translated_263_residues
MIKELPAGVAKVLKRLHHPLDVILLCVRWYVAYSLSLRDLEEMMAERGLAVDHSTVRRWVIKLLPLFEKAFRRHKQSVSK
SWRMDETYLKVRGKWAYLYRAVDKAGNTIDFLLCARRDKVAARRYFEKAIGQNGAPDTVAIDKSAANLAALHAVNAHRET
PIRIRQRKYLNNIVEQDHRAIKRRARPMLGFKNFRCARILIGGIETMHMIAKGRCGDPKAFACPPRSNSIPWFHRPAHSS
PPTSTNRPYRDRTHQCTDPGCAA
>Mature_263_residues
MIKELPAGVAKVLKRLHHPLDVILLCVRWYVAYSLSLRDLEEMMAERGLAVDHSTVRRWVIKLLPLFEKAFRRHKQSVSK
SWRMDETYLKVRGKWAYLYRAVDKAGNTIDFLLCARRDKVAARRYFEKAIGQNGAPDTVAIDKSAANLAALHAVNAHRET
PIRIRQRKYLNNIVEQDHRAIKRRARPMLGFKNFRCARILIGGIETMHMIAKGRCGDPKAFACPPRSNSIPWFHRPAHSS
PPTSTNRPYRDRTHQCTDPGCAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 30189; Mature: 30189

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKELPAGVAKVLKRLHHPLDVILLCVRWYVAYSLSLRDLEEMMAERGLAVDHSTVRRWV
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHH
IKLLPLFEKAFRRHKQSVSKSWRMDETYLKVRGKWAYLYRAVDKAGNTIDFLLCARRDKV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHCCCEEEHHHHHHHHHH
AARRYFEKAIGQNGAPDTVAIDKSAANLAALHAVNAHRETPIRIRQRKYLNNIVEQDHRA
HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IKRRARPMLGFKNFRCARILIGGIETMHMIAKGRCGDPKAFACPPRSNSIPWFHRPAHSS
HHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCC
PPTSTNRPYRDRTHQCTDPGCAA
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKELPAGVAKVLKRLHHPLDVILLCVRWYVAYSLSLRDLEEMMAERGLAVDHSTVRRWV
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHH
IKLLPLFEKAFRRHKQSVSKSWRMDETYLKVRGKWAYLYRAVDKAGNTIDFLLCARRDKV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHCCCEEEHHHHHHHHHH
AARRYFEKAIGQNGAPDTVAIDKSAANLAALHAVNAHRETPIRIRQRKYLNNIVEQDHRA
HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IKRRARPMLGFKNFRCARILIGGIETMHMIAKGRCGDPKAFACPPRSNSIPWFHRPAHSS
HHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCC
PPTSTNRPYRDRTHQCTDPGCAA
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2548057; 2365064 [H]