Click here to switch to the map view.

The map label for this gene is glcD [H]

Identifier: 94310550

GI number: 94310550

Start: 1733873

End: 1735279

Strand: Reverse

Name: glcD [H]

Synonym: Rmet_1608

Alternate gene names: 94310550

Gene position: 1735279-1733873 (Counterclockwise)

Preceding gene: 94310551

Following gene: 335055536

Centisome position: 44.18

GC content: 66.03

Gene sequence:

>1407_bases
ATGTCCAATACACCCGCCCTCCTCTCTGAACTCGCCGCGATCCTCGACCCTGCCGGCCTGCAAACCGGCGACGCCATCGA
CACACGCTTCCGCAAGGACTGGTACGCGCCGCTGGGTAACCCGCCGCTGGCCGTCGTGCGGCCGCGTACGACGGCGGACG
TCGCGGCCATCCTTGCCGCATGCCACAGGCATGGCCAGCCAGTCGTTCCCCAAGGAGGCCTGACAGGCCTGGCGTCTGCC
GCGACGCCCGGGCAAGGCGAGGTCGTGCTATCCCTCGAACGGATGCGTGGCGTCGAAGAGATCGACGAGCAGGCTGGCAC
GATGACGGTCTGGGCGGGCACCACGCTGCAGGCCGCGCAGGAAGCCGCGCGCGCGGCCGGATGGTTGCTGGCGGTGGATC
TCGGCGCACGCGGCAGTTGCCAGATCGGCGGCAATATCGCCACCAATGCGGGCGGCAATCGCGTGATTCGGTACGGCATG
ATGCGCGACCAGGTACTCGGGATTGAAGTCGTGCTGGCCGATGGCACCGTGCTGACATCACTGAACAAGATGCTCAAGAA
CAACGCTGGCTACGACCTGCGCCAGGTTTTCGTGGGCAGCGAAGGCACGCTCGGCGTGATCACGCGCGCGGTCCTGCGGC
TCGCACCACTGCCGTCAGCCACGCAAACGGCGCTCTGCGCGCTGAAGAGTTTCGACGATGTGGTTCGCCTGCTGCGCCAC
GCGCAGCGCGCGCTTTCCGGCCGTGTCTCTGCCTTCGAAGCGATGTGGGCCGACTACTACACGCTAGTGACCACGCGTGT
TCCGGGCGTACGCGCACCGCTTGCGGCAGGGCATCCATTCTATGTGCTGGTCGACCTGCAAGGCAGCGACGCTGATGCCG
ATGCCGCCGCGTTCGAACGGATGCTGGAAGGCGCGATGGAAAGCGGCCTGATTGTCGATGCCGCGGTGGCCGCGAGTGGT
AAGGAGGCGGAGAGCTTTTGGAAGCTGCGCGATGCGGTGGCCGAGTTTCCGCAAATGTGGGCACCGAACGCGGCTTTCGA
CGTCAGCCTGCCGATTGGCAGCATTGGCCGATTCGCCGACGCGTTGCGTAGCGCCATCCTGGAACGATGGCCGAGCGCCG
AACTGGTGAACTTCGGACACGTCGGCGACAGCAATCTGCACTTCAGCGTGCACCTGCCCGGGGTAGACGCGGCGGCGTTC
CCAGAAGCCGAGATCGACGCGGTAGCCTATGCCATCGTTCGCGAGTTCGCCGGGAGCGTGTCGGCGGAGCACGGCATCGG
CATCCACAAGAAGCCCTACCTCGGCAACTCGCGCACTCCTGAGGAGCTGGCGCTGATGCGCACAATCAAGGCAGCCCTCG
ACCCGAAGGGGATTCTGAACCCCGGGCGGGTATTCGATCCTGCCTGA

Upstream 100 bases:

>100_bases
ATCACGAAGGTGACGAATGGCACTTTACGTTGCCGTGATGGATTCCTACGATCAGGTTTTGTCGCGCGGCATACGCTGAC
CCTTTCCATTCTGCTACTCG

Downstream 100 bases:

>100_bases
GATGAACTACGGGTCGACTGTCGCCGTCAACCTGAAACCAGGGAGCCTCAGCCCACCAATGCCGTGACCCAGCCCGTCAA
GGTTGGGCCGGCGATGACCA

Product: Oxidoreductase, FAD linked, C-terminal domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSNTPALLSELAAILDPAGLQTGDAIDTRFRKDWYAPLGNPPLAVVRPRTTADVAAILAACHRHGQPVVPQGGLTGLASA
ATPGQGEVVLSLERMRGVEEIDEQAGTMTVWAGTTLQAAQEAARAAGWLLAVDLGARGSCQIGGNIATNAGGNRVIRYGM
MRDQVLGIEVVLADGTVLTSLNKMLKNNAGYDLRQVFVGSEGTLGVITRAVLRLAPLPSATQTALCALKSFDDVVRLLRH
AQRALSGRVSAFEAMWADYYTLVTTRVPGVRAPLAAGHPFYVLVDLQGSDADADAAAFERMLEGAMESGLIVDAAVAASG
KEAESFWKLRDAVAEFPQMWAPNAAFDVSLPIGSIGRFADALRSAILERWPSAELVNFGHVGDSNLHFSVHLPGVDAAAF
PEAEIDAVAYAIVREFAGSVSAEHGIGIHKKPYLGNSRTPEELALMRTIKAALDPKGILNPGRVFDPA

Sequences:

>Translated_468_residues
MSNTPALLSELAAILDPAGLQTGDAIDTRFRKDWYAPLGNPPLAVVRPRTTADVAAILAACHRHGQPVVPQGGLTGLASA
ATPGQGEVVLSLERMRGVEEIDEQAGTMTVWAGTTLQAAQEAARAAGWLLAVDLGARGSCQIGGNIATNAGGNRVIRYGM
MRDQVLGIEVVLADGTVLTSLNKMLKNNAGYDLRQVFVGSEGTLGVITRAVLRLAPLPSATQTALCALKSFDDVVRLLRH
AQRALSGRVSAFEAMWADYYTLVTTRVPGVRAPLAAGHPFYVLVDLQGSDADADAAAFERMLEGAMESGLIVDAAVAASG
KEAESFWKLRDAVAEFPQMWAPNAAFDVSLPIGSIGRFADALRSAILERWPSAELVNFGHVGDSNLHFSVHLPGVDAAAF
PEAEIDAVAYAIVREFAGSVSAEHGIGIHKKPYLGNSRTPEELALMRTIKAALDPKGILNPGRVFDPA
>Mature_467_residues
SNTPALLSELAAILDPAGLQTGDAIDTRFRKDWYAPLGNPPLAVVRPRTTADVAAILAACHRHGQPVVPQGGLTGLASAA
TPGQGEVVLSLERMRGVEEIDEQAGTMTVWAGTTLQAAQEAARAAGWLLAVDLGARGSCQIGGNIATNAGGNRVIRYGMM
RDQVLGIEVVLADGTVLTSLNKMLKNNAGYDLRQVFVGSEGTLGVITRAVLRLAPLPSATQTALCALKSFDDVVRLLRHA
QRALSGRVSAFEAMWADYYTLVTTRVPGVRAPLAAGHPFYVLVDLQGSDADADAAAFERMLEGAMESGLIVDAAVAASGK
EAESFWKLRDAVAEFPQMWAPNAAFDVSLPIGSIGRFADALRSAILERWPSAELVNFGHVGDSNLHFSVHLPGVDAAAFP
EAEIDAVAYAIVREFAGSVSAEHGIGIHKKPYLGNSRTPEELALMRTIKAALDPKGILNPGRVFDPA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=456, Percent_Identity=38.1578947368421, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI37595756, Length=470, Percent_Identity=30.6382978723404, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI37595754, Length=497, Percent_Identity=28.9738430583501, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI4501993, Length=453, Percent_Identity=22.075055187638, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1789351, Length=431, Percent_Identity=30.3944315545244, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI48994907, Length=501, Percent_Identity=24.750499001996, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787977, Length=253, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI48994914, Length=156, Percent_Identity=32.6923076923077, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17534361, Length=446, Percent_Identity=34.7533632286996, Blast_Score=263, Evalue=1e-70,
Organism=Caenorhabditis elegans, GI71992373, Length=472, Percent_Identity=30.0847457627119, Blast_Score=187, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI71992381, Length=472, Percent_Identity=29.4491525423729, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI71992392, Length=394, Percent_Identity=30.4568527918782, Blast_Score=152, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17556096, Length=463, Percent_Identity=20.3023758099352, Blast_Score=82, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6320023, Length=445, Percent_Identity=37.0786516853933, Blast_Score=323, Evalue=3e-89,
Organism=Saccharomyces cerevisiae, GI6320764, Length=445, Percent_Identity=32.5842696629214, Blast_Score=258, Evalue=1e-69,
Organism=Saccharomyces cerevisiae, GI6320027, Length=491, Percent_Identity=27.4949083503055, Blast_Score=148, Evalue=2e-36,
Organism=Drosophila melanogaster, GI18921117, Length=430, Percent_Identity=38.3720930232558, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24639277, Length=430, Percent_Identity=38.3720930232558, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24639275, Length=430, Percent_Identity=38.3720930232558, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24653753, Length=477, Percent_Identity=22.8511530398323, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49403; Mature: 49272

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTPALLSELAAILDPAGLQTGDAIDTRFRKDWYAPLGNPPLAVVRPRTTADVAAILAA
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
CHRHGQPVVPQGGLTGLASAATPGQGEVVLSLERMRGVEEIDEQAGTMTVWAGTTLQAAQ
HHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHHCCHHHHHHCCCCEEEEECCHHHHHH
EAARAAGWLLAVDLGARGSCQIGGNIATNAGGNRVIRYGMMRDQVLGIEVVLADGTVLTS
HHHHHCCEEEEEECCCCCCEEECCEEEECCCCCCEEEECCHHCCEEEEEEEEECCHHHHH
LNKMLKNNAGYDLRQVFVGSEGTLGVITRAVLRLAPLPSATQTALCALKSFDDVVRLLRH
HHHHHHCCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AQRALSGRVSAFEAMWADYYTLVTTRVPGVRAPLAAGHPFYVLVDLQGSDADADAAAFER
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
MLEGAMESGLIVDAAVAASGKEAESFWKLRDAVAEFPQMWAPNAAFDVSLPIGSIGRFAD
HHHHHHHCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH
ALRSAILERWPSAELVNFGHVGDSNLHFSVHLPGVDAAAFPEAEIDAVAYAIVREFAGSV
HHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
SAEHGIGIHKKPYLGNSRTPEELALMRTIKAALDPKGILNPGRVFDPA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNTPALLSELAAILDPAGLQTGDAIDTRFRKDWYAPLGNPPLAVVRPRTTADVAAILAA
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
CHRHGQPVVPQGGLTGLASAATPGQGEVVLSLERMRGVEEIDEQAGTMTVWAGTTLQAAQ
HHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHHCCHHHHHHCCCCEEEEECCHHHHHH
EAARAAGWLLAVDLGARGSCQIGGNIATNAGGNRVIRYGMMRDQVLGIEVVLADGTVLTS
HHHHHCCEEEEEECCCCCCEEECCEEEECCCCCCEEEECCHHCCEEEEEEEEECCHHHHH
LNKMLKNNAGYDLRQVFVGSEGTLGVITRAVLRLAPLPSATQTALCALKSFDDVVRLLRH
HHHHHHCCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AQRALSGRVSAFEAMWADYYTLVTTRVPGVRAPLAAGHPFYVLVDLQGSDADADAAAFER
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
MLEGAMESGLIVDAAVAASGKEAESFWKLRDAVAEFPQMWAPNAAFDVSLPIGSIGRFAD
HHHHHHHCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH
ALRSAILERWPSAELVNFGHVGDSNLHFSVHLPGVDAAAFPEAEIDAVAYAIVREFAGSV
HHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
SAEHGIGIHKKPYLGNSRTPEELALMRTIKAALDPKGILNPGRVFDPA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]