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The map label for this gene is opuBB [H]

Identifier: 94310540

GI number: 94310540

Start: 1722932

End: 1724482

Strand: Direct

Name: opuBB [H]

Synonym: Rmet_1598

Alternate gene names: 94310540

Gene position: 1722932-1724482 (Clockwise)

Preceding gene: 94310539

Following gene: 94310541

Centisome position: 43.86

GC content: 66.22

Gene sequence:

>1551_bases
TTGTCTCATTCATTCACGCGGTTCGCCCTCCGGCAATGCCGCTTCCTTGGCGCGCTGTTAGTGCTGTTGGTCATGGCCTG
TGGTCCGGCTGCCGGCGCCGACACGCTGCGCATCGGTTCCAAGCGCTTTACCGAGTCGTACATCCTGGGCGAGATCCTGA
GGCAGGTTGCCGAGCCGCACGGCCCGGTGCGATATCTGCCGGGGCTGGGCAACACCGCCATCGTGTTCCAGGCGCTCCAG
GCCGGAAGCATCGACCTATACCCGGACTACACCGGCACGCTCGCCAGCGAGATCCTGAGACTACCCGGTACCGCCACGCT
GGAGCAGATCAACGCCGCGCTGGCGCCAATGGGATTGGGCGCGGCCATCGCGCTCGGCTTCGACAATACCTATGCGATCG
CGGTCTCCGATGCCCAGCCAGTCAGCCTGCGCGCGCTTGGCGACCTTGCGGGGCAGCCGGACCTGCGGATCGCCCTGTCG
CACGAGTTTCTTGGCCGTGCCGATGGCTGGCCCGCGCTCAAGCGCGCGTATGGACTGCCTCAGCGACCATCCGGGATCGA
TCATGGCCTCGCCTACGAGGCATTGGCGCACGGACAGATTGACGCGACCGACATCTATTCGACCGATGCCAAGATCAGCA
AGTACCATCTGCGCGTGCTCGAGGACAACCAGCGCGTGTTTCCGCGCTACGAGGCGGTGATCGTCTACCGGCTCGACGTG
CCGACGCGTCATGCGGCGGCGTGGCAGGCACTGCGGCGTCTGGCTGGCACTATCGGAACGCAGGACATGATCGCCATGAA
TGCGGCAGCGGAAGTCGATGGGAAGACGTTCTCTGCTGTGGCCCGCAATTTCCTGTCCGGGCATCCAGGGGTATCGGCGG
ACGGTGTGGCGAGATCGGATCAGCGCGACAACCTGGCGGGGATGCTGACGAACGCGGATACCGGGCGCCTGACTGTCCGG
CATCTGGCGCTGGTCGGCGGCTCGGTGGGGGCCGCCACGCTGGTCGGCGTGCCGCTGGGTGTGGTGGCTGCGCGCCGGCG
CCGGTTCGGTCAGGTGCTGCTGGCCTTGGTCGGTATGTTGCAGACCATCCCGTCATTGGCGCTGCTGGCGATGCTGATAC
CGGCGCTGGGCCGCATCGGCATCTGGCCGGCACTGGTCGCGCTGTTCCTCTATGCTTTGCTGCCGATCGTGCGCAACGCG
TGCACCGGGTTGCAGGAAGTGCCGGCGGGGATGCGCGATGCCGCCCTGGCACTGGGGATGCGGCCGTTGCAAGTGCTCTG
GTACGTGGAGTTGCCGCTCTCCCTGCCGGTGTTGCTGGCCGGTATCAAGACCGCAGCCATCATCAGCGTAGGCACGGCGA
CCATCGCTGCGTTTGTCGGCGCGGGCGGGTACGGCGAGCGGATCGTGACCGGACTGGCGCTGAACGACGCCACCCAGCTT
CTCGGCGGCGCGATTCCGGCCGCGCTGCTGGCATTGGTGGTGCAGGGTGGCTTTGGTCTGGCCGAATACTTGCGGGATCG
AAAGCGTGCACGCATGGCGAAATTTGGGTAA

Upstream 100 bases:

>100_bases
CTCCCCGGCGGCCACCTGATCCGCCTGACACGCTTGATCTGCCGCGGCGCTTGCCGGATGCCCTTATGATGGGGGGACAT
CACCGAGCGGAGGCTTCGGC

Downstream 100 bases:

>100_bases
CAATGCGGTGTCCCCGAGGTGCATCACAACAAGAACGGTACCGCGATGCGTGGATTCGCAATCGGATGGCTGGCATGGAT
GACGTGGCTGTCGGTGAGCA

Product: ABC transporter periplasmic glycine betaine/choline-binding lipoprotein and permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MSHSFTRFALRQCRFLGALLVLLVMACGPAAGADTLRIGSKRFTESYILGEILRQVAEPHGPVRYLPGLGNTAIVFQALQ
AGSIDLYPDYTGTLASEILRLPGTATLEQINAALAPMGLGAAIALGFDNTYAIAVSDAQPVSLRALGDLAGQPDLRIALS
HEFLGRADGWPALKRAYGLPQRPSGIDHGLAYEALAHGQIDATDIYSTDAKISKYHLRVLEDNQRVFPRYEAVIVYRLDV
PTRHAAAWQALRRLAGTIGTQDMIAMNAAAEVDGKTFSAVARNFLSGHPGVSADGVARSDQRDNLAGMLTNADTGRLTVR
HLALVGGSVGAATLVGVPLGVVAARRRRFGQVLLALVGMLQTIPSLALLAMLIPALGRIGIWPALVALFLYALLPIVRNA
CTGLQEVPAGMRDAALALGMRPLQVLWYVELPLSLPVLLAGIKTAAIISVGTATIAAFVGAGGYGERIVTGLALNDATQL
LGGAIPAALLALVVQGGFGLAEYLRDRKRARMAKFG

Sequences:

>Translated_516_residues
MSHSFTRFALRQCRFLGALLVLLVMACGPAAGADTLRIGSKRFTESYILGEILRQVAEPHGPVRYLPGLGNTAIVFQALQ
AGSIDLYPDYTGTLASEILRLPGTATLEQINAALAPMGLGAAIALGFDNTYAIAVSDAQPVSLRALGDLAGQPDLRIALS
HEFLGRADGWPALKRAYGLPQRPSGIDHGLAYEALAHGQIDATDIYSTDAKISKYHLRVLEDNQRVFPRYEAVIVYRLDV
PTRHAAAWQALRRLAGTIGTQDMIAMNAAAEVDGKTFSAVARNFLSGHPGVSADGVARSDQRDNLAGMLTNADTGRLTVR
HLALVGGSVGAATLVGVPLGVVAARRRRFGQVLLALVGMLQTIPSLALLAMLIPALGRIGIWPALVALFLYALLPIVRNA
CTGLQEVPAGMRDAALALGMRPLQVLWYVELPLSLPVLLAGIKTAAIISVGTATIAAFVGAGGYGERIVTGLALNDATQL
LGGAIPAALLALVVQGGFGLAEYLRDRKRARMAKFG
>Mature_515_residues
SHSFTRFALRQCRFLGALLVLLVMACGPAAGADTLRIGSKRFTESYILGEILRQVAEPHGPVRYLPGLGNTAIVFQALQA
GSIDLYPDYTGTLASEILRLPGTATLEQINAALAPMGLGAAIALGFDNTYAIAVSDAQPVSLRALGDLAGQPDLRIALSH
EFLGRADGWPALKRAYGLPQRPSGIDHGLAYEALAHGQIDATDIYSTDAKISKYHLRVLEDNQRVFPRYEAVIVYRLDVP
TRHAAAWQALRRLAGTIGTQDMIAMNAAAEVDGKTFSAVARNFLSGHPGVSADGVARSDQRDNLAGMLTNADTGRLTVRH
LALVGGSVGAATLVGVPLGVVAARRRRFGQVLLALVGMLQTIPSLALLAMLIPALGRIGIWPALVALFLYALLPIVRNAC
TGLQEVPAGMRDAALALGMRPLQVLWYVELPLSLPVLLAGIKTAAIISVGTATIAAFVGAGGYGERIVTGLALNDATQLL
GGAIPAALLALVVQGGFGLAEYLRDRKRARMAKFG

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=205, Percent_Identity=38.0487804878049, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788449, Length=179, Percent_Identity=36.8715083798883, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1789033, Length=162, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54427; Mature: 54296

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSFTRFALRQCRFLGALLVLLVMACGPAAGADTLRIGSKRFTESYILGEILRQVAEPH
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCC
GPVRYLPGLGNTAIVFQALQAGSIDLYPDYTGTLASEILRLPGTATLEQINAALAPMGLG
CCEEECCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
AAIALGFDNTYAIAVSDAQPVSLRALGDLAGQPDLRIALSHEFLGRADGWPALKRAYGLP
EEEEEECCCEEEEEECCCCCCCHHHHHHCCCCCCEEEEECHHHHCCCCCCHHHHHHCCCC
QRPSGIDHGLAYEALAHGQIDATDIYSTDAKISKYHLRVLEDNQRVFPRYEAVIVYRLDV
CCCCCCCCCHHHHHHHCCCCCCHHEECCCCHHHHHEEEEEECCCCCCCCEEEEEEEEECC
PTRHAAAWQALRRLAGTIGTQDMIAMNAAAEVDGKTFSAVARNFLSGHPGVSADGVARSD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
QRDNLAGMLTNADTGRLTVRHLALVGGSVGAATLVGVPLGVVAARRRRFGQVLLALVGML
CCCCHHHEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTIPSLALLAMLIPALGRIGIWPALVALFLYALLPIVRNACTGLQEVPAGMRDAALALGM
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHCC
RPLQVLWYVELPLSLPVLLAGIKTAAIISVGTATIAAFVGAGGYGERIVTGLALNDATQL
CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LGGAIPAALLALVVQGGFGLAEYLRDRKRARMAKFG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SHSFTRFALRQCRFLGALLVLLVMACGPAAGADTLRIGSKRFTESYILGEILRQVAEPH
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCC
GPVRYLPGLGNTAIVFQALQAGSIDLYPDYTGTLASEILRLPGTATLEQINAALAPMGLG
CCEEECCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
AAIALGFDNTYAIAVSDAQPVSLRALGDLAGQPDLRIALSHEFLGRADGWPALKRAYGLP
EEEEEECCCEEEEEECCCCCCCHHHHHHCCCCCCEEEEECHHHHCCCCCCHHHHHHCCCC
QRPSGIDHGLAYEALAHGQIDATDIYSTDAKISKYHLRVLEDNQRVFPRYEAVIVYRLDV
CCCCCCCCCHHHHHHHCCCCCCHHEECCCCHHHHHEEEEEECCCCCCCCEEEEEEEEECC
PTRHAAAWQALRRLAGTIGTQDMIAMNAAAEVDGKTFSAVARNFLSGHPGVSADGVARSD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
QRDNLAGMLTNADTGRLTVRHLALVGGSVGAATLVGVPLGVVAARRRRFGQVLLALVGML
CCCCHHHEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTIPSLALLAMLIPALGRIGIWPALVALFLYALLPIVRNACTGLQEVPAGMRDAALALGM
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHCC
RPLQVLWYVELPLSLPVLLAGIKTAAIISVGTATIAAFVGAGGYGERIVTGLALNDATQL
CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LGGAIPAALLALVVQGGFGLAEYLRDRKRARMAKFG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]