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The map label for this gene is ygcF [C]

Identifier: 94310513

GI number: 94310513

Start: 1691693

End: 1692328

Strand: Direct

Name: ygcF [C]

Synonym: Rmet_1571

Alternate gene names: 94310513

Gene position: 1691693-1692328 (Clockwise)

Preceding gene: 94310512

Following gene: 94310514

Centisome position: 43.07

GC content: 63.52

Gene sequence:

>636_bases
ATGACTTACGCCGTCAAGGAAATCTTCTACACGCTGCAGGGCGAAGGCGCTAACGCCGGTCGCGCCGCGGTGTTCTGCCG
TTTCTCGGGTTGCAACCTGTGGACCGGTCGTGAGGAAGACCGCGCGCGGGCGGTATGCCAGTTCTGCGATACCGATTTTG
TCGGGACTGATGGCACGCTGGGTGGCAAGTACAAGACCGCCGATGAACTGGCGGCAGTGGTGGCGGCCGAATGGCCGCAG
GGTGCAGGCGGCAAACCGCTCGTGGTCTGCACTGGCGGTGAGCCGCTGCTGCAGCTCGACGCGCCGCTGATCGGCGCGCT
GCACGCGCGCGGTTTCGAGATCGCCATCGAAACCAACGGCACGATCGAGGTGCCTGAGGGTATCGACTGGGTTTGCGTGA
GCCCGAAGATGGGTTCGGAACTCGTGGTGAAGAAGGGCGACGAACTCAAGGTCGTGATTCCGCAGGATGGCCAGGATTTC
GCGGCATACGAGCAACTGGATTTCCAGTATTTCATGGTGCAGGCCATGGATGGCCCGCTGGCCCGGCAGAATACTGCCGC
GGCAGTGGAGTTCTGCCAGCGCCACCCGCGCTGGCGCCTGTCGCTGCAGACCCACAAGCTGCTGGGCATTCGCTGA

Upstream 100 bases:

>100_bases
AAGTTCTTGCTACAATCACCGGTTGCCCACCCATCGCATTTTGCTTATTTTTTAGGCAGGCGGGCGATTACGGACACCCC
CAAGACCCAAAACCAACCGC

Downstream 100 bases:

>100_bases
CACATGAGCAAACAAGTTTCGATTACGCGCCGGCTCGAATTCGACGCCGGGCACCGCATCCCAAGCCATGGCGGACAGTG
CCGCAACATCCATGGCCACC

Product: organic radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTLGGKYKTADELAAVVAAEWPQ
GAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNGTIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDF
AAYEQLDFQYFMVQAMDGPLARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR

Sequences:

>Translated_211_residues
MTYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTLGGKYKTADELAAVVAAEWPQ
GAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNGTIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDF
AAYEQLDFQYFMVQAMDGPLARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR
>Mature_210_residues
TYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTLGGKYKTADELAAVVAAEWPQG
AGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNGTIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFA
AYEQLDFQYFMVQAMDGPLARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=238, Percent_Identity=31.0924369747899, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 22973; Mature: 22842

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTL
CCEEEEEEEEEEECCCCCCCCEEEEEEECCCEEECCCCHHHHHHHHHHHCCCCCCCCCCC
GGKYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNG
CCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCHHHHHCCCCEEEEEECCC
TIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPL
EEECCCCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCCHHHHHCCCEEEEEEECCCCC
ARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR
CCCCHHHHHHHHHHCCCEEEEEEEEEEECCC
>Mature Secondary Structure 
TYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTL
CEEEEEEEEEEECCCCCCCCEEEEEEECCCEEECCCCHHHHHHHHHHHCCCCCCCCCCC
GGKYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNG
CCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCHHHHHCCCCEEEEEECCC
TIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPL
EEECCCCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCCHHHHHCCCEEEEEEECCCCC
ARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR
CCCCHHHHHHHHHHCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]