Click here to switch to the map view.

The map label for this gene is tnpB [H]

Identifier: 94310506

GI number: 94310506

Start: 1685010

End: 1685846

Strand: Direct

Name: tnpB [H]

Synonym: Rmet_1564

Alternate gene names: 94310506

Gene position: 1685010-1685846 (Clockwise)

Preceding gene: 94310505

Following gene: 94310512

Centisome position: 42.9

GC content: 56.75

Gene sequence:

>837_bases
GTGCTCGAACTGAGGCAACACTATGATTTGGCGGCGCTACTGAAGGTTGCTGGACTGTCGCGCAGCACGTTCTATTACCA
GGCCAAGGTTATCGGGGCCGGCGATAGGTACGCCGACTTGAAGGCGCGTATCCAGAGCATCTACGACCATCATAAGGGCC
GTTATGGCTACCGGCGGATCACGGCGGCACTACGACGATCTGGCGAGACGATCAATCACAAGGTGGTCCAGCGGTTGATG
CAGTCACTGGGCCTGAGATCCTTGGTTCGGCCAAAGAAGTACCGCTCATACCGAGGGCCAGGTCACGTGTCCGTGCCTAA
CCTGTTGCAGAGGCAGTTCCAAGCCAGGCGCCCGAATGAGAAGTGGGTGACGGACGTGACCGAATTCAATGTCGGCGGCG
ACAAACTCTACCTCTCGCCTGTTATGGACCTATACAACGGGGAAATCGTGGCCTATCAGACCAGCCGGCGACCGCACTTC
AGCCTGGTTGGCACGATGCTCAGGAAGGCATTGAACAAGCTCTCCAGTGCTCAACGGCCGCTGCTGCATTCCGATCAGGG
TTGGCAATACCAGATGCCGGCCTACCGGCGGGTGCTGGCCGAGCACGGGGTGACAAAAAGCATGTCACGTAGGGGAAATT
GCCTGGACAACGCCGCCATGGAGAGCTTCTTTGGAACGCTCAAATCCGAATGCTTCTATCTGAGCAAGTTCACCGCCATT
GACCAGTTGCAGGATGCCTTGCGCCGCTATATCCACTACTACAATCACCACCGCATCAGGACCAAACTAAAAGGGCTGAG
TCCTGTGCAATACAGGACTCAGCCCTCTATGGCTTAG

Upstream 100 bases:

>100_bases
GTAAAGAGAACGAATACCTGCGCGCGGAGGTGGCGTACCTAAAAAAATGGAATGCCTTGGTTCAGGCCAAGAAAGCGGCC
GCACAGAAAAAGCGCGGCTA

Downstream 100 bases:

>100_bases
CCTACCGCCTTAACTGTCCAACTTCTTGGGGTCAGTTCATAACTGCGGGCTTTTTTGTGCCATTTTTCCGGCACCGGTCT
GTCGACCACGGCCTGGCTCA

Product: transposase catalytic site ISRme12

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MLELRQHYDLAALLKVAGLSRSTFYYQAKVIGAGDRYADLKARIQSIYDHHKGRYGYRRITAALRRSGETINHKVVQRLM
QSLGLRSLVRPKKYRSYRGPGHVSVPNLLQRQFQARRPNEKWVTDVTEFNVGGDKLYLSPVMDLYNGEIVAYQTSRRPHF
SLVGTMLRKALNKLSSAQRPLLHSDQGWQYQMPAYRRVLAEHGVTKSMSRRGNCLDNAAMESFFGTLKSECFYLSKFTAI
DQLQDALRRYIHYYNHHRIRTKLKGLSPVQYRTQPSMA

Sequences:

>Translated_278_residues
MLELRQHYDLAALLKVAGLSRSTFYYQAKVIGAGDRYADLKARIQSIYDHHKGRYGYRRITAALRRSGETINHKVVQRLM
QSLGLRSLVRPKKYRSYRGPGHVSVPNLLQRQFQARRPNEKWVTDVTEFNVGGDKLYLSPVMDLYNGEIVAYQTSRRPHF
SLVGTMLRKALNKLSSAQRPLLHSDQGWQYQMPAYRRVLAEHGVTKSMSRRGNCLDNAAMESFFGTLKSECFYLSKFTAI
DQLQDALRRYIHYYNHHRIRTKLKGLSPVQYRTQPSMA
>Mature_278_residues
MLELRQHYDLAALLKVAGLSRSTFYYQAKVIGAGDRYADLKARIQSIYDHHKGRYGYRRITAALRRSGETINHKVVQRLM
QSLGLRSLVRPKKYRSYRGPGHVSVPNLLQRQFQARRPNEKWVTDVTEFNVGGDKLYLSPVMDLYNGEIVAYQTSRRPHF
SLVGTMLRKALNKLSSAQRPLLHSDQGWQYQMPAYRRVLAEHGVTKSMSRRGNCLDNAAMESFFGTLKSECFYLSKFTAI
DQLQDALRRYIHYYNHHRIRTKLKGLSPVQYRTQPSMA

Specific function: Involved in the transposition of the insertion sequence IS150 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=234, Percent_Identity=28.6324786324786, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI1789981, Length=275, Percent_Identity=57.8181818181818, Blast_Score=347, Evalue=4e-97,
Organism=Escherichia coli, GI1788405, Length=275, Percent_Identity=30.5454545454545, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787263, Length=275, Percent_Identity=30.5454545454545, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786753, Length=275, Percent_Identity=30.5454545454545, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786570, Length=275, Percent_Identity=30.5454545454545, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786490, Length=275, Percent_Identity=30.5454545454545, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32248; Mature: 32248

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELRQHYDLAALLKVAGLSRSTFYYQAKVIGAGDRYADLKARIQSIYDHHKGRYGYRRI
CCCCHHHCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHH
TAALRRSGETINHKVVQRLMQSLGLRSLVRPKKYRSYRGPGHVSVPNLLQRQFQARRPNE
HHHHHHCCCHHHHHHHHHHHHHHCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCH
KWVTDVTEFNVGGDKLYLSPVMDLYNGEIVAYQTSRRPHFSLVGTMLRKALNKLSSAQRP
HHHHHHHHCCCCCCEEEHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
LLHSDQGWQYQMPAYRRVLAEHGVTKSMSRRGNCLDNAAMESFFGTLKSECFYLSKFTAI
CCCCCCCCEECCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQLQDALRRYIHYYNHHRIRTKLKGLSPVQYRTQPSMA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELRQHYDLAALLKVAGLSRSTFYYQAKVIGAGDRYADLKARIQSIYDHHKGRYGYRRI
CCCCHHHCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHH
TAALRRSGETINHKVVQRLMQSLGLRSLVRPKKYRSYRGPGHVSVPNLLQRQFQARRPNE
HHHHHHCCCHHHHHHHHHHHHHHCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCH
KWVTDVTEFNVGGDKLYLSPVMDLYNGEIVAYQTSRRPHFSLVGTMLRKALNKLSSAQRP
HHHHHHHHCCCCCCEEEHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
LLHSDQGWQYQMPAYRRVLAEHGVTKSMSRRGNCLDNAAMESFFGTLKSECFYLSKFTAI
CCCCCCCCEECCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQLQDALRRYIHYYNHHRIRTKLKGLSPVQYRTQPSMA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2841644; 2541046; 8041620; 9278503 [H]