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The map label for this gene is trbI [H]

Identifier: 94310501

GI number: 94310501

Start: 1680920

End: 1682188

Strand: Direct

Name: trbI [H]

Synonym: Rmet_1559

Alternate gene names: 94310501

Gene position: 1680920-1682188 (Clockwise)

Preceding gene: 94310500

Following gene: 94310502

Centisome position: 42.79

GC content: 69.42

Gene sequence:

>1269_bases
ATGAGCCAGGACGACACCCCCGACCTTGCCGCGCCTTCGGCGGGCAAGGTGGCGCCCGAGGCGGTGGCGCTGCGCGCCCA
GCCGCGCCCGGTCACGCGCCTGAATCGGCGCACGCTGGCCATCCTCGTCGGCGGCCTGTCGGTCGCCGTGCTCGGGGCCA
CGATCTGGTCATTGCAGCCGCACCGGCGTGGCGCGGGCGAGCAGACCGAGCTTTACAACGTGGATCGTGTCTCGAAGTCC
GAAGGGCTGGACGGCCTGCCGGCCGACTACTCGAAGCTGCCGCCGAAGGTGCCCGAGCTGGGGCCGCCGCTGCCGGGCGA
CCTCGGCCCGGCCATCGTGAACTCGCAGCAGCCAGCCGTGGCCGCCTACGCGGCCCCCGGCCACGATCCCAACGACGCCT
TGCGCAAGGAAGCGGAGGCCGCTGCGGCTTCGTCGGTGTTCTTCCGCTCGGGTGGTCAAGCCGCGGCCACGGTGGCGCAG
GCAGCGCCGGGCGTACCTGGCGTGGCAAGCACGCTCGCGGCCTTCGATCCGCTCGCCGCCGGGCCGGCCTCGACGGCGGC
CCAGCCCGCCGACCCGACCGCCGTGCAGAACCGGCAAGACCAGAAAGAGGCGTTCCTGAAAGCCGGTTCTACGGAAACCC
GTAATTCCGGCAATCTGGCGCTGCCGACGTCGCCGTATCAGGTCATGGCTGGAACGGTGATCGCCGGGGCGCTGGTGACG
GGCATCAAGTCGGACTTGCCGGGCGACGTGATCGCCACCGTCACGGAGCCGGTCTATGACACGGCCACGGGCAAGTTCCT
GCTGATCCCGCAGGGATCGCGCATCCTGGGCAAATACAACAGCCAGGTCAGCTATGGGCAGAGCCGCGTGCAAGTGGTGT
GGAACCGCGTCATCCTGCCGGACACGTCATCGCTGACGCTCGACAACCTCGTGGGCACTGACCCGGCCGGCTACGCGGGC
CTGGAAGACGACGTGGACTGGCACTGGAAGCGCATCTTTGCCGGTGCGGTGCTGACGACGCTGCTGGGCGTCGGCGCCGA
GCTGGCCGCGCCGGAGAACCGCCAGGACGGCAACCGCATCGTCATCGCCGGGCGCGACAGCGCCCAGGACAGCATCAATC
AGGTCGGGCAAGAGATCACCCGGCGCAACATGAACATCCAGCCGACGTTGACGGCACGGCCGGGCTTGCCGGTTCGGGTG
ATCGTGGCGCGCGACCTCGTGTTGCGTCCTTACCAACCCATGTTCTATCAGCTTGGAGGTGCGCGATGA

Upstream 100 bases:

>100_bases
TGTTCGGCGCCGCCGAGTTGCGCTTGGGCGGGGACAAGGGCGACGTGGTGCGGATCGAGCGCACGGATGGCGTCGTGGGC
TCGGTCGGGAGGAACTGACG

Downstream 100 bases:

>100_bases
GTACCGCCCGAAAACTCCGCCTCGGCCCGTTGCCGTCCAGCGGTAGCACGAAGCTGACGTTCACCTGCCCGGCCAGCCTG
AAAGCCGACCTGGACGCCTA

Product: type IV secretion system transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MSQDDTPDLAAPSAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQPHRRGAGEQTELYNVDRVSKS
EGLDGLPADYSKLPPKVPELGPPLPGDLGPAIVNSQQPAVAAYAAPGHDPNDALRKEAEAAAASSVFFRSGGQAAATVAQ
AAPGVPGVASTLAAFDPLAAGPASTAAQPADPTAVQNRQDQKEAFLKAGSTETRNSGNLALPTSPYQVMAGTVIAGALVT
GIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRVILPDTSSLTLDNLVGTDPAGYAG
LEDDVDWHWKRIFAGAVLTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEITRRNMNIQPTLTARPGLPVRV
IVARDLVLRPYQPMFYQLGGAR

Sequences:

>Translated_422_residues
MSQDDTPDLAAPSAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQPHRRGAGEQTELYNVDRVSKS
EGLDGLPADYSKLPPKVPELGPPLPGDLGPAIVNSQQPAVAAYAAPGHDPNDALRKEAEAAAASSVFFRSGGQAAATVAQ
AAPGVPGVASTLAAFDPLAAGPASTAAQPADPTAVQNRQDQKEAFLKAGSTETRNSGNLALPTSPYQVMAGTVIAGALVT
GIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRVILPDTSSLTLDNLVGTDPAGYAG
LEDDVDWHWKRIFAGAVLTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEITRRNMNIQPTLTARPGLPVRV
IVARDLVLRPYQPMFYQLGGAR
>Mature_421_residues
SQDDTPDLAAPSAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQPHRRGAGEQTELYNVDRVSKSE
GLDGLPADYSKLPPKVPELGPPLPGDLGPAIVNSQQPAVAAYAAPGHDPNDALRKEAEAAAASSVFFRSGGQAAATVAQA
APGVPGVASTLAAFDPLAAGPASTAAQPADPTAVQNRQDQKEAFLKAGSTETRNSGNLALPTSPYQVMAGTVIAGALVTG
IKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRVILPDTSSLTLDNLVGTDPAGYAGL
EDDVDWHWKRIFAGAVLTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEITRRNMNIQPTLTARPGLPVRVI
VARDLVLRPYQPMFYQLGGAR

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 44100; Mature: 43969

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDDTPDLAAPSAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQP
CCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCEEEEEEECHHHHHHHHHHHHCCCC
HRRGAGEQTELYNVDRVSKSEGLDGLPADYSKLPPKVPELGPPLPGDLGPAIVNSQQPAV
HHCCCCCCCCEECCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCE
AAYAAPGHDPNDALRKEAEAAAASSVFFRSGGQAAATVAQAAPGVPGVASTLAAFDPLAA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCC
GPASTAAQPADPTAVQNRQDQKEAFLKAGSTETRNSGNLALPTSPYQVMAGTVIAGALVT
CCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
GIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRVILP
HHHCCCCCCEEEHHHCCHHHCCCCCEEEEECCCHHHHCCCCCHHHCHHHHHHHHHEEECC
DTSSLTLDNLVGTDPAGYAGLEDDVDWHWKRIFAGAVLTTLLGVGAELAAPENRQDGNRI
CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEE
VIAGRDSAQDSINQVGQEITRRNMNIQPTLTARPGLPVRVIVARDLVLRPYQPMFYQLGG
EEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECHHHHCCCCHHHHHCCC
AR
CC
>Mature Secondary Structure 
SQDDTPDLAAPSAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQP
CCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCEEEEEEECHHHHHHHHHHHHCCCC
HRRGAGEQTELYNVDRVSKSEGLDGLPADYSKLPPKVPELGPPLPGDLGPAIVNSQQPAV
HHCCCCCCCCEECCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCE
AAYAAPGHDPNDALRKEAEAAAASSVFFRSGGQAAATVAQAAPGVPGVASTLAAFDPLAA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCC
GPASTAAQPADPTAVQNRQDQKEAFLKAGSTETRNSGNLALPTSPYQVMAGTVIAGALVT
CCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
GIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRVILP
HHHCCCCCCEEEHHHCCHHHCCCCCEEEEECCCHHHHCCCCCHHHCHHHHHHHHHEEECC
DTSSLTLDNLVGTDPAGYAGLEDDVDWHWKRIFAGAVLTTLLGVGAELAAPENRQDGNRI
CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEE
VIAGRDSAQDSINQVGQEITRRNMNIQPTLTARPGLPVRVIVARDLVLRPYQPMFYQLGG
EEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECHHHHCCCCHHHHHCCC
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]