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The map label for this gene is traR [H]

Identifier: 94310488

GI number: 94310488

Start: 1668624

End: 1669604

Strand: Direct

Name: traR [H]

Synonym: Rmet_1546

Alternate gene names: 94310488

Gene position: 1668624-1669604 (Clockwise)

Preceding gene: 94310486

Following gene: 94310489

Centisome position: 42.48

GC content: 54.84

Gene sequence:

>981_bases
ATGACCTCAGGGCGCGATTCCCTACGGCGGGCTTGTATGGATCTTAGGCATTTTAGGTACTTTATTGCCGTAGCCGAAGA
GCTGCATTTTGCCCGTGCCGCGGAAAGACTGCATATCGAGCAATCGCCGCTATCGCGAGCCATAAAAGAACTAGAAGAAG
AGTTGGGGGTGACACTCTTCTCACGTACCACGCGCAGCACTAGATTGACTCGCGCGGGTCAACTTTTTTTGGAGAGCGCA
TACAGGGTGATGGCTGCCTTTCAACAAGCCCAGGACAGTGTCAAGGCTGTCGCCAACGGCTTCCAGGGACAACTGCGCAT
TGCGTTATCGGATGGCATCACACCGTCGCGTCTACCGATATTGCTTGCGCTCTGTCGGCAAGAAGAGCCGGAAATTGAAC
TCCGGTTTTTTGAGGTGACGCTTTCGCAACAGATAAAAGGCCTTCAAGATGATTTGTATGACGTCGGCTTCGCGCAGTCC
GATGAAGTCGGCGATGGAATTGTGGCAATACCTGTGTGGAGCGATGCGCTTATGGTGGCAGTGCCGGCCCGACACCCACT
TCTGGCTCACAAGCGAATACCTTTGGATGAGCTATTGCGCTATCCGTTGGTCCTCTGCGATCCGCAGATCTGCGAAGGTC
ACGCAAAGCACGTTGATAGAGTGTTACGTCAGGCAGACATGGAGCCGCTGATTGCTGAACGAGTTGCTACTGGCAATTTA
ATGATGGCGCTGGTATCGGCTGGCTTTGCGTTAGCACTGACGGGCGCGACTCATATTGCTGCGAGCCGTGAACCAGGTGT
CGTAGCACGACCACTGGCTTCGCGCGTGCCACCATTGACGACCTACCTGCTTCACACCGAAGGCGAACCCTCAGATGTAT
TGGCTCGCTTTATTGAGCGCGTGCAAGCCATCGAAGTACCTGATACCCCTCGATCCGCAATGGGCCACCGCCCCAATCCA
CCCGAGGAAGCTGTGCCATGA

Upstream 100 bases:

>100_bases
CTCTTCTTGGCAGTAGCTGCCCTTATGACGATCAAGCCCGTGTGACGTGAAGCCTTGAGCGGCAAATAGAAGAGCAGGTT
GCAAGGCTTGACTGATACGA

Downstream 100 bases:

>100_bases
AGAAGATCGTTCCGCTGTTGCTAGGTGTCGCCTTGACTGCCTGCGGCCAATCTGAGGTGCCTCAGAAGGCCAATACGTCG
GAGGCGGATATTGCAACGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTSGRDSLRRACMDLRHFRYFIAVAEELHFARAAERLHIEQSPLSRAIKELEEELGVTLFSRTTRSTRLTRAGQLFLESA
YRVMAAFQQAQDSVKAVANGFQGQLRIALSDGITPSRLPILLALCRQEEPEIELRFFEVTLSQQIKGLQDDLYDVGFAQS
DEVGDGIVAIPVWSDALMVAVPARHPLLAHKRIPLDELLRYPLVLCDPQICEGHAKHVDRVLRQADMEPLIAERVATGNL
MMALVSAGFALALTGATHIAASREPGVVARPLASRVPPLTTYLLHTEGEPSDVLARFIERVQAIEVPDTPRSAMGHRPNP
PEEAVP

Sequences:

>Translated_326_residues
MTSGRDSLRRACMDLRHFRYFIAVAEELHFARAAERLHIEQSPLSRAIKELEEELGVTLFSRTTRSTRLTRAGQLFLESA
YRVMAAFQQAQDSVKAVANGFQGQLRIALSDGITPSRLPILLALCRQEEPEIELRFFEVTLSQQIKGLQDDLYDVGFAQS
DEVGDGIVAIPVWSDALMVAVPARHPLLAHKRIPLDELLRYPLVLCDPQICEGHAKHVDRVLRQADMEPLIAERVATGNL
MMALVSAGFALALTGATHIAASREPGVVARPLASRVPPLTTYLLHTEGEPSDVLARFIERVQAIEVPDTPRSAMGHRPNP
PEEAVP
>Mature_325_residues
TSGRDSLRRACMDLRHFRYFIAVAEELHFARAAERLHIEQSPLSRAIKELEEELGVTLFSRTTRSTRLTRAGQLFLESAY
RVMAAFQQAQDSVKAVANGFQGQLRIALSDGITPSRLPILLALCRQEEPEIELRFFEVTLSQQIKGLQDDLYDVGFAQSD
EVGDGIVAIPVWSDALMVAVPARHPLLAHKRIPLDELLRYPLVLCDPQICEGHAKHVDRVLRQADMEPLIAERVATGNLM
MALVSAGFALALTGATHIAASREPGVVARPLASRVPPLTTYLLHTEGEPSDVLARFIERVQAIEVPDTPRSAMGHRPNPP
EEAVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=32.9268292682927, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI2367136, Length=266, Percent_Identity=31.9548872180451, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788887, Length=291, Percent_Identity=30.9278350515464, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI157672245, Length=216, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1790399, Length=296, Percent_Identity=25.6756756756757, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790208, Length=257, Percent_Identity=26.4591439688716, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787806, Length=305, Percent_Identity=25.9016393442623, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693105, Length=191, Percent_Identity=26.1780104712042, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=203, Percent_Identity=29.064039408867, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786713, Length=202, Percent_Identity=33.1683168316832, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=240, Percent_Identity=24.5833333333333, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787530, Length=263, Percent_Identity=24.3346007604563, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787949, Length=132, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=127, Percent_Identity=33.8582677165354, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=28.169014084507, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787589, Length=161, Percent_Identity=29.8136645962733, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=157, Percent_Identity=31.8471337579618, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=144, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI48994962, Length=82, Percent_Identity=41.4634146341463, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788296, Length=298, Percent_Identity=24.1610738255034, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786508, Length=191, Percent_Identity=24.0837696335079, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693193, Length=201, Percent_Identity=29.3532338308458, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36088; Mature: 35957

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGRDSLRRACMDLRHFRYFIAVAEELHFARAAERLHIEQSPLSRAIKELEEELGVTLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
SRTTRSTRLTRAGQLFLESAYRVMAAFQQAQDSVKAVANGFQGQLRIALSDGITPSRLPI
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
LLALCRQEEPEIELRFFEVTLSQQIKGLQDDLYDVGFAQSDEVGDGIVAIPVWSDALMVA
HHHHHCCCCCCEEEEEEEEEHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEE
VPARHPLLAHKRIPLDELLRYPLVLCDPQICEGHAKHVDRVLRQADMEPLIAERVATGNL
ECCCCCCHHCCCCCHHHHHHCCEEECCHHHHCHHHHHHHHHHHHCCCCHHHHHHHHCCHH
MMALVSAGFALALTGATHIAASREPGVVARPLASRVPPLTTYLLHTEGEPSDVLARFIER
HHHHHHCCHHEEECCHHHHHCCCCCCCEECHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
VQAIEVPDTPRSAMGHRPNPPEEAVP
HHHCCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TSGRDSLRRACMDLRHFRYFIAVAEELHFARAAERLHIEQSPLSRAIKELEEELGVTLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
SRTTRSTRLTRAGQLFLESAYRVMAAFQQAQDSVKAVANGFQGQLRIALSDGITPSRLPI
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
LLALCRQEEPEIELRFFEVTLSQQIKGLQDDLYDVGFAQSDEVGDGIVAIPVWSDALMVA
HHHHHCCCCCCEEEEEEEEEHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEE
VPARHPLLAHKRIPLDELLRYPLVLCDPQICEGHAKHVDRVLRQADMEPLIAERVATGNL
ECCCCCCHHCCCCCHHHHHHCCEEECCHHHHCHHHHHHHHHHHHCCCCHHHHHHHHCCHH
MMALVSAGFALALTGATHIAASREPGVVARPLASRVPPLTTYLLHTEGEPSDVLARFIER
HHHHHHCCHHEEECCHHHHHCCCCCCCEECHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
VQAIEVPDTPRSAMGHRPNPPEEAVP
HHHCCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]