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The map label for this gene is cbbR2 [H]

Identifier: 94310450

GI number: 94310450

Start: 1629952

End: 1630875

Strand: Reverse

Name: cbbR2 [H]

Synonym: Rmet_1508

Alternate gene names: 94310450

Gene position: 1630875-1629952 (Counterclockwise)

Preceding gene: 94310471

Following gene: 335055531

Centisome position: 41.52

GC content: 63.96

Gene sequence:

>924_bases
ATGCAGATCACCTTCAGGCAACTCAGGGTTGTCAGTGAGGTCGCTCGTTACTCGAGCGTGATCCGTGCCGCCGAGGCTCT
ACACCTGACGGCGCCAGCCGTTTCGCTGCAAATCAAGGAAGCCGAGCGGCAGGTCGGGCTGACCTTGTTCGATCGCGCGG
GCCGGCGCATGACGCTGACCACGACTGGGGAGTACTTCCTCGTCTATGCGCGCCGGCTGTTGGCGACGCTGAAGGACGCC
GAGGATATGATGGCCCGTTTCAAGCGCCTGGAGTCCGGCCGACTGACGATCGGGATGGTGGGTGCCGCCAGCTACTTCCT
GCCGCAGTTGCTGGCGAAGTTCCACGCCGAGCATCCTGCCGTGGACGTGCGCCTGCGCCTGGCTAGTCGGGAAAAGCTTG
GCGTGATGATGCAGGGCAACGATGTGGACCTCTGCATCATGGGTCGGCCGCCACAGGATCCCCCCACTCGAGCGGAACCG
TTCGCGTCGCACCCGCATGTGCTGGTGGTGTCGCCACAGCATCGCTTCGCGCGCGCCGAAGCTGTGCCCGCGGTGGCGCT
CGCCAACGAGCCGTTCATCGTGCGCGAACCCGATTCGGGAACCCGGGAGGCGCTTCAGAAGTACCTGGATGCGCACCGAA
TTCAGCCCACGTTCGTCATGGAGATGCCTAGCAACGAGGCAATCAAGCAGGCGGTAATGGCCGGCATGGGCGTCAGTCTT
CTGTCGCTGCACACGATCGCGCTGGAGTGGTCCAACGGCCTGATCGCCGTACCTCATGTTGAAGGCCTGCCCTTGGAGCG
GCGGTGGAACGTGGTGAACATTGCGGCCAAGCAGTTGTCGCCGGCGGCCGAGGCATTCCGCTACTTCGTGCTCGAGCACG
GCGAGTCTCATCTTGCTGCGATGATGAGCCACGACGCGTCCTGA

Upstream 100 bases:

>100_bases
TCTCCTGAGAAGGGATCCGGGGTACGGACGAACATTAATCGCTGTGATGAATAAAAGAAAGTTTGATATTCTTTCGTTTT
CGTTTACCTTTTGCTAAATC

Downstream 100 bases:

>100_bases
CGACAGCGACGTCGCCGATCCGACATGACCAACCCTCGCACGTCGCCGCAGCCGCTTCCGCAGAGAGCCCGTGAAAGTAC
CAGCAATGCCAGTGGTATAA

Product: LysR-type transcriptional regulator (RuBisCO operon transcriptional regulator)

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MQITFRQLRVVSEVARYSSVIRAAEALHLTAPAVSLQIKEAERQVGLTLFDRAGRRMTLTTTGEYFLVYARRLLATLKDA
EDMMARFKRLESGRLTIGMVGAASYFLPQLLAKFHAEHPAVDVRLRLASREKLGVMMQGNDVDLCIMGRPPQDPPTRAEP
FASHPHVLVVSPQHRFARAEAVPAVALANEPFIVREPDSGTREALQKYLDAHRIQPTFVMEMPSNEAIKQAVMAGMGVSL
LSLHTIALEWSNGLIAVPHVEGLPLERRWNVVNIAAKQLSPAAEAFRYFVLEHGESHLAAMMSHDAS

Sequences:

>Translated_307_residues
MQITFRQLRVVSEVARYSSVIRAAEALHLTAPAVSLQIKEAERQVGLTLFDRAGRRMTLTTTGEYFLVYARRLLATLKDA
EDMMARFKRLESGRLTIGMVGAASYFLPQLLAKFHAEHPAVDVRLRLASREKLGVMMQGNDVDLCIMGRPPQDPPTRAEP
FASHPHVLVVSPQHRFARAEAVPAVALANEPFIVREPDSGTREALQKYLDAHRIQPTFVMEMPSNEAIKQAVMAGMGVSL
LSLHTIALEWSNGLIAVPHVEGLPLERRWNVVNIAAKQLSPAAEAFRYFVLEHGESHLAAMMSHDAS
>Mature_307_residues
MQITFRQLRVVSEVARYSSVIRAAEALHLTAPAVSLQIKEAERQVGLTLFDRAGRRMTLTTTGEYFLVYARRLLATLKDA
EDMMARFKRLESGRLTIGMVGAASYFLPQLLAKFHAEHPAVDVRLRLASREKLGVMMQGNDVDLCIMGRPPQDPPTRAEP
FASHPHVLVVSPQHRFARAEAVPAVALANEPFIVREPDSGTREALQKYLDAHRIQPTFVMEMPSNEAIKQAVMAGMGVSL
LSLHTIALEWSNGLIAVPHVEGLPLERRWNVVNIAAKQLSPAAEAFRYFVLEHGESHLAAMMSHDAS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (cfxLS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=228, Percent_Identity=32.0175438596491, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788481, Length=261, Percent_Identity=31.0344827586207, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=29, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788748, Length=316, Percent_Identity=28.7974683544304, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367136, Length=288, Percent_Identity=27.4305555555556, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790399, Length=264, Percent_Identity=23.8636363636364, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=27.5618374558304, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=27.9245283018868, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=25.4098360655738, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=25.5892255892256, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=127, Percent_Identity=36.2204724409449, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789173, Length=166, Percent_Identity=31.9277108433735, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=244, Percent_Identity=27.4590163934426, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=277, Percent_Identity=26.3537906137184, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994962, Length=151, Percent_Identity=32.4503311258278, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788626, Length=269, Percent_Identity=27.8810408921933, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34091; Mature: 34091

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITFRQLRVVSEVARYSSVIRAAEALHLTAPAVSLQIKEAERQVGLTLFDRAGRRMTLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEHHHHHHCCCEECCCCCEEEEE
TTGEYFLVYARRLLATLKDAEDMMARFKRLESGRLTIGMVGAASYFLPQLLAKFHAEHPA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCC
VDVRLRLASREKLGVMMQGNDVDLCIMGRPPQDPPTRAEPFASHPHVLVVSPQHRFARAE
EEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
AVPAVALANEPFIVREPDSGTREALQKYLDAHRIQPTFVMEMPSNEAIKQAVMAGMGVSL
CCCEEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHH
LSLHTIALEWSNGLIAVPHVEGLPLERRWNVVNIAAKQLSPAAEAFRYFVLEHGESHLAA
HHHEEEEEEECCCEEECCCCCCCCCHHCCCEEEHHHHHCCHHHHHHHHHHHHCCCHHHHH
MMSHDAS
HHHCCCC
>Mature Secondary Structure
MQITFRQLRVVSEVARYSSVIRAAEALHLTAPAVSLQIKEAERQVGLTLFDRAGRRMTLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEHHHHHHCCCEECCCCCEEEEE
TTGEYFLVYARRLLATLKDAEDMMARFKRLESGRLTIGMVGAASYFLPQLLAKFHAEHPA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCC
VDVRLRLASREKLGVMMQGNDVDLCIMGRPPQDPPTRAEPFASHPHVLVVSPQHRFARAE
EEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
AVPAVALANEPFIVREPDSGTREALQKYLDAHRIQPTFVMEMPSNEAIKQAVMAGMGVSL
CCCEEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHH
LSLHTIALEWSNGLIAVPHVEGLPLERRWNVVNIAAKQLSPAAEAFRYFVLEHGESHLAA
HHHEEEEEEECCCEEECCCCCCCCCHHCCCEEEHHHHHCCHHHHHHHHHHHHCCCHHHHH
MMSHDAS
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1779759 [H]