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The map label for this gene is 94310415

Identifier: 94310415

GI number: 94310415

Start: 1593336

End: 1594307

Strand: Reverse

Name: 94310415

Synonym: Rmet_1473

Alternate gene names: NA

Gene position: 1594307-1593336 (Counterclockwise)

Preceding gene: 335055527

Following gene: 94310414

Centisome position: 40.59

GC content: 57.82

Gene sequence:

>972_bases
ATGAGCCAGTCAGCGACCAACGCCCCCTCCTATAGCCAGCGCCGCATCGGCACGCTGCAAGCCCTGCATGTTGCGCTGGG
AATGCCTGTCGGCGACCTCCCGACATTGGCCGAGCGTGCTAACGACCTTTACCGAGTCGCAAAGTCCATCACCAAACCGG
ACGGCAGCATCCGTAATACTTACGATGCACGGGAGCCATTGAAGGAAGTTCATCGAAGGATCAAGAGTCAGATCCTCGAC
CACGTGAACTACCCGGCCTATTTGACGGGGAGTATCAAAGGCTGCGATTACAAGGTCAACGCCTCGCTCCATGCCCGCGC
ACGGATCGTCATCAACGAGGACATCAGCGGTTTTTTCCCTTCCACGTCGGCAGACCGCGTGTTCAGCATCTGGCGCGGCT
TCTTCGGCTTCAGCGAGGACGTGGCGCGATGCCTGACACAACTGACGACCCGGCATGGCGAACTGCCCCAAGGGGCGATA
ACCAGTTCATTCCTTGCCAACCTCGTGTTCTGGTGGGATGAGCCCGAGTTGTTCGGCAAGTTCGCAGCCCAAGGTCTTGT
CTACTCTCGCTATGTCGATGACATCGCCGTGTCGTCTAAAACGTTCCTGACCAACGAGGCAAAAACGAACGTAGTGCGGC
AGGTGTACGGCATGCTGCTCAAGCATGGCTATAAGGCCAAACGAGCCAAGCATGAAATTGCCACATCGGGCAGCCGCATG
GCCGTCACGAAGCTCGCAGTGAACAACAAGCCTGGCTTGGACAAAGCCACGCGCAACAAGATTCGTGCAGTCGTCCATGC
CGTTGAACGACGCATCGCGCAAGGCGAGGCGCTTTCGTTTGAGCGTGGCCCATACGCCCAGGCAATGGGACAAGTTCTGC
ATCTGGAAAGATTTCATCCCGGCGATGCGGCACCACTGAAGAGGCGACTATTAGCCCTCAAAGAGGCAGGTGCAGCCCTG
CCCCACTCCTAA

Upstream 100 bases:

>100_bases
GTGGGCATCATCTTTTTTCTCGGCGCTGAAGGGGATGATCTGACGGGCATCGGCAAGTCGCTGCAAGGAGACCTTGCGCG
CACGGCACTGGAACTGCTCA

Downstream 100 bases:

>100_bases
TAGAGAGGGAGGAGACAAGTGATCCTGACCGATAACGAAACCAAAGTTGATCTGCTGAATAACGAAGCCATTGCCACCAC
GATTATCGGGCTGCTTCGTG

Product: putative RNA-directed DNA polymerase

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSQSATNAPSYSQRRIGTLQALHVALGMPVGDLPTLAERANDLYRVAKSITKPDGSIRNTYDAREPLKEVHRRIKSQILD
HVNYPAYLTGSIKGCDYKVNASLHARARIVINEDISGFFPSTSADRVFSIWRGFFGFSEDVARCLTQLTTRHGELPQGAI
TSSFLANLVFWWDEPELFGKFAAQGLVYSRYVDDIAVSSKTFLTNEAKTNVVRQVYGMLLKHGYKAKRAKHEIATSGSRM
AVTKLAVNNKPGLDKATRNKIRAVVHAVERRIAQGEALSFERGPYAQAMGQVLHLERFHPGDAAPLKRRLLALKEAGAAL
PHS

Sequences:

>Translated_323_residues
MSQSATNAPSYSQRRIGTLQALHVALGMPVGDLPTLAERANDLYRVAKSITKPDGSIRNTYDAREPLKEVHRRIKSQILD
HVNYPAYLTGSIKGCDYKVNASLHARARIVINEDISGFFPSTSADRVFSIWRGFFGFSEDVARCLTQLTTRHGELPQGAI
TSSFLANLVFWWDEPELFGKFAAQGLVYSRYVDDIAVSSKTFLTNEAKTNVVRQVYGMLLKHGYKAKRAKHEIATSGSRM
AVTKLAVNNKPGLDKATRNKIRAVVHAVERRIAQGEALSFERGPYAQAMGQVLHLERFHPGDAAPLKRRLLALKEAGAAL
PHS
>Mature_322_residues
SQSATNAPSYSQRRIGTLQALHVALGMPVGDLPTLAERANDLYRVAKSITKPDGSIRNTYDAREPLKEVHRRIKSQILDH
VNYPAYLTGSIKGCDYKVNASLHARARIVINEDISGFFPSTSADRVFSIWRGFFGFSEDVARCLTQLTTRHGELPQGAIT
SSFLANLVFWWDEPELFGKFAAQGLVYSRYVDDIAVSSKTFLTNEAKTNVVRQVYGMLLKHGYKAKRAKHEIATSGSRMA
VTKLAVNNKPGLDKATRNKIRAVVHAVERRIAQGEALSFERGPYAQAMGQVLHLERFHPGDAAPLKRRLLALKEAGAALP
HS

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 35789; Mature: 35658

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSATNAPSYSQRRIGTLQALHVALGMPVGDLPTLAERANDLYRVAKSITKPDGSIRNT
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
YDAREPLKEVHRRIKSQILDHVNYPAYLTGSIKGCDYKVNASLHARARIVINEDISGFFP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCEEEEEEEEEECCCCCCCC
STSADRVFSIWRGFFGFSEDVARCLTQLTTRHGELPQGAITSSFLANLVFWWDEPELFGK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
FAAQGLVYSRYVDDIAVSSKTFLTNEAKTNVVRQVYGMLLKHGYKAKRAKHEIATSGSRM
HHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCE
AVTKLAVNNKPGLDKATRNKIRAVVHAVERRIAQGEALSFERGPYAQAMGQVLHLERFHP
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
GDAAPLKRRLLALKEAGAALPHS
CCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SQSATNAPSYSQRRIGTLQALHVALGMPVGDLPTLAERANDLYRVAKSITKPDGSIRNT
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
YDAREPLKEVHRRIKSQILDHVNYPAYLTGSIKGCDYKVNASLHARARIVINEDISGFFP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCEEEEEEEEEECCCCCCCC
STSADRVFSIWRGFFGFSEDVARCLTQLTTRHGELPQGAITSSFLANLVFWWDEPELFGK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
FAAQGLVYSRYVDDIAVSSKTFLTNEAKTNVVRQVYGMLLKHGYKAKRAKHEIATSGSRM
HHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCE
AVTKLAVNNKPGLDKATRNKIRAVVHAVERRIAQGEALSFERGPYAQAMGQVLHLERFHP
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
GDAAPLKRRLLALKEAGAALPHS
CCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]